bgafun 1.4.0
Iain Wallace
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/bgafun | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/bgafun.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'bgafun/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bgafun' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'bgafun' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating bgafun-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating bgafun-manual.tex ... OK
* checking bgafun-manual.tex using pdflatex ... OK
* Installing *source* package 'bgafun' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: made4
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from package:base :
within
Loading required package: seqinr
** help
>>> Building/Updating help pages for package 'bgafun'
Formats: text html latex example
Calculate_Row_Weights text html latex example
Henikoff_weights text html latex
LDH text html latex
LDH.aap text html latex
LDH.aap.ave text html latex
LDH.amino text html latex
LDH.amino.gapless text html latex
LDH.amino.pseudo text html latex
LDH.groups text html latex
Weight_Amino text html latex
add_pseudo_counts text html latex example
amino_counts text html latex
average_cols_aap text html latex example
bgafun text html latex example
calculate_pseudo text html latex
convertAAP.package text html latex
convert_aln_AAP text html latex example
convert_aln_amino text html latex example
convert_amino.package text html latex
convert_seq_AAP text html latex
convert_seq_amino text html latex
create_colnames_AAP text html latex
create_colnames_amino text html latex
create_probab text html latex
create_profile text html latex
create_profile_strings text html latex example
pseudo_counts text html latex
remove_gaps text html latex
remove_gaps_groups text html latex example
run_between_pca text html latex example
sum_20_aln text html latex
sum_20_cols text html latex
sum_aln text html latex
top_residues_2_groups text html latex example
** building package indices ...
* DONE (bgafun)