arrayQualityMetrics 1.8.1
Audrey Kauffmann
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/arrayQualityMetrics | | Last Changed Rev: 35144 / Revision: 38965 | | Last Changed Date: 2008-11-07 06:57:18 -0800 (Fri, 07 Nov 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '1.8.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
arrayQualityMetrics,BeadLevelList: no visible binding for global
variable ‘sec3text’
arrayQualityMetrics,BeadLevelList: no visible binding for global
variable ‘gctext’
arrayQualityMetrics,BeadLevelList: no visible binding for global
variable ‘legendgc’
arrayQualityMetrics,BeadLevelList: no visible binding for global
variable ‘gotext’
arrayQualityMetrics,BeadLevelList: no visible binding for global
variable ‘legendgo’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating arrayQualityMetrics-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayQualityMetrics-manual.tex ... OK
* checking arrayQualityMetrics-manual.tex using pdflatex ... OK
* Installing *source* package 'arrayQualityMetrics' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: geneplotter
Loading required package: lattice
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Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
Loading required package: genefilter
Loading required package: survival
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Loading required package: beadarray
Loading required package: hwriter
Loading required package: sma
Attaching package: 'beadarray'
The following object(s) are masked from package:limma :
backgroundCorrect,
imageplot,
plotMA
Loading required package: marray
Attaching package: 'marray'
The following object(s) are masked from package:sma :
cor.na,
length.na,
log.na,
mean.na,
order.na,
prod.na,
quantile.na,
scale.na,
stat.gnames,
sum.na,
var.na
** help
>>> Building/Updating help pages for package 'arrayQualityMetrics'
Formats: text html latex example
XYfromGAL text html latex
arrayQualityMetrics text html latex example
** building package indices ...
* DONE (arrayQualityMetrics)