aroma.light 1.10.0
Henrik Bengtsson
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/aroma.light | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ WARNINGS ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/aroma.light.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... WARNING
Found the following significant warnings:
WARNING: found \itemize inside \value in file 'medianPolish.matrix.Rd'
See '/loc/home/biocbuild/bbs-2.3-bioc/meat/aroma.light.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
robustSmoothSpline.default : smooth.spline.fit: no visible binding for
global variable ‘ns’
robustSmoothSpline.default : smooth.spline0: no visible binding for
global variable ‘ipars’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating aroma.light-Ex.R ... OK
* checking examples ... OK
* creating aroma.light-manual.tex ... OK
* checking aroma.light-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.3-bioc/meat/aroma.light.Rcheck/00check.log
for details
* Installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
Loading required package: R.methodsS3
R.methodsS3 v1.0.3 (2008-07-02) successfully loaded. See ?R.methodsS3 for help.
** help
>>> Building/Updating help pages for package 'aroma.light'
Formats: text html latex example
1._Calibration_and_Normalization text html latex
Non-documented_objects text html latex
aroma.light-package text html latex
averageQuantile.list text html latex
backtransformAffine.matrix text html latex example
calibrateMultiscan.matrix text html latex example
distanceBetweenLines text html latex example
fitIWPCA.matrix text html latex
iwpca.matrix text html latex example
likelihood.smooth.spline text html latex example
WARNING: found \itemize inside \value in file 'medianPolish.matrix.Rd'
medianPolish.matrix text html latex example
normalizeAffine.matrix text html latex example
normalizeAverage.matrix text html latex
normalizeCurveFit.matrix text html latex example
normalizeFragmentLength text html latex example
normalizeQuantileRank.list text html latex example
normalizeQuantileRank.matrix text html latex example
normalizeQuantileRank.numeric text html latex
normalizeQuantileSpline.list text html latex
normalizeQuantileSpline.matrix text html latex example
normalizeQuantileSpline.numeric text html latex
plotDensity.list text html latex
plotMvsA.matrix text html latex
plotMvsAPairs.matrix text html latex
plotMvsMPairs.matrix text html latex
plotXYCurve.matrix text html latex
plotXYCurve.numeric text html latex
print.SmoothSplineLikelihood text html latex
robustSmoothSpline text html latex example
sampleCorrelations.matrix text html latex example
sampleTuples text html latex example
weightedMedian text html latex example
wpca.matrix text html latex example
** building package indices ...
* DONE (aroma.light)