altcdfenvs 2.4.0
Laurent Gautier
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/altcdfenvs | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | [ OK ] | OK | OK |
* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* preparing 'altcdfenvs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: affyio
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:Biobase :
annotation
The following object(s) are masked from package:base :
cbind,
rbind,
sapply
Attaching package: 'Biostrings'
The following object(s) are masked from package:base :
chartr,
order,
substr,
substring
Loading required package: hypergraph
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:Biostrings :
complement
Attaching package: 'hypergraph'
The following object(s) are masked from package:Biostrings :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
Warning in matchSignature(signature, fdef, where) :
in the method signature for function "toHypergraph" no definition for class: "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
** help
>>> Building/Updating help pages for package 'altcdfenvs'
Formats: text html latex example
AffyProbesMatch-class text html latex example
CdfEnvAffy-class text html latex example
appendCdfEnvAffy text html latex example
buildCdfEnv.biostrings text html latex
cdfenv text html latex example
cdfenvEx text html latex example
copyCdfEnvAffy text html latex
Note: removing empty section \details in file 'countduplicated.Rd'
Note: removing empty section \examples in file 'countduplicated.Rd'
countduplicated text html latex
geneNames text html latex
getxy.probeseq text html latex example
Note: removing empty section \details in file 'index2xy.Rd'
Note: removing empty section \section{Warning} in file 'index2xy.Rd'
index2xy text html latex example
Note: removing empty section \examples in file 'indexProbes.CdfEnvAffy.Rd'
indexProbes.CdfEnvAffy text html latex
Note: removing empty section \note in file 'matchAffyProbes.Rd'
matchAffyProbes text html latex example
plot.CdfEnvAffy text html latex example
removeIndex text html latex example
toHypergraph text html latex
unique.CdfEnvAffy text html latex example
utils.FASTA text html latex example
Note: removing empty section \value in file 'validAffyBatch.Rd'
validAffyBatch text html latex example
** building package indices ...
* DONE (altcdfenvs)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'altcdfenvs_2.4.0.tar.gz'