SNPchip 1.6.0
Robert Scharpf
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/SNPchip | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/SNPchip.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SNPchip-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SNPchip-manual.tex ... OK
* checking SNPchip-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/SNPchip.Rcheck
---------- Making package SNPchip ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package SNPchip for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
Creating a new generic function for "plot" in "SNPchip"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example chm
HmmPredict-class text html latex example chm
ParESet-class text html latex example chm
ParSnpCallSet-class text html latex example chm
ParSnpCopyNumberSet-class text html latex example chm
ParSnpSet-class text html latex example chm
RatioSnpSet-class text html latex example chm
RatioSnpSet-methods text html latex chm
addFeatureData-method text html latex chm
alleleA text html latex chm
alleleB text html latex chm
centromere text html latex example chm
chromosome2integer text html latex chm
chromosomeAnnotation text html latex example chm
chromosomeSize text html latex example chm
coerce-methods text html latex chm
crlmmOut text html latex example chm
cytoband text html latex example chm
dbSnpId text html latex example chm
enzyme text html latex chm
featureData-accessors text html latex chm
fragmentLength text html latex chm
getPar text html latex chm
hapmap text html latex example chm
hmmPredict text html latex chm
plotCytoband text html latex example chm
plotPredictions text html latex example chm
plotSnp text html latex example chm
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
Note: removing empty section \source in file 'sample.snpset.Rd'
Note: removing empty section \details in file 'sample.snpset.Rd'
Note: removing empty section \references in file 'sample.snpset.Rd'
sample.snpset text html latex example chm
Note: removing empty section \author in file 'selectSomeIndex.Rd'
Note: removing empty section \details in file 'selectSomeIndex.Rd'
Note: removing empty section \note in file 'selectSomeIndex.Rd'
Note: removing empty section \references in file 'selectSomeIndex.Rd'
Note: removing empty section \examples in file 'selectSomeIndex.Rd'
Note: removing empty section \seealso in file 'selectSomeIndex.Rd'
Note: removing empty section \author in file 'selectSomeIndex.Rd'
Note: removing empty section \details in file 'selectSomeIndex.Rd'
Note: removing empty section \note in file 'selectSomeIndex.Rd'
Note: removing empty section \references in file 'selectSomeIndex.Rd'
Note: removing empty section \examples in file 'selectSomeIndex.Rd'
Note: removing empty section \seealso in file 'selectSomeIndex.Rd'
selectSomeIndex text html latex chm
show-methods text html latex chm
Note: removing empty section \value in file 'showSummary.Rd'
Note: removing empty section \details in file 'showSummary.Rd'
Note: removing empty section \note in file 'showSummary.Rd'
Note: removing empty section \references in file 'showSummary.Rd'
Note: removing empty section \examples in file 'showSummary.Rd'
Note: removing empty section \value in file 'showSummary.Rd'
Note: removing empty section \details in file 'showSummary.Rd'
Note: removing empty section \note in file 'showSummary.Rd'
Note: removing empty section \references in file 'showSummary.Rd'
Note: removing empty section \examples in file 'showSummary.Rd'
showSummary text html latex chm
smoothSnp text html latex chm
snpPar text html latex example chm
snpset text html latex chm
summary-methods text html latex chm
updateObject-methods text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\SNPchip.Rcheck\00_pkg_src\SNPchip\chm\SNPchip.chm
Compile time: 0 minutes, 0 seconds
37 Topics
166 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\SNPchip.Rcheck\00_pkg_src\SNPchip\chm\SNPchip.chm, 40,202 bytes
Compression decreased file by 68,497 bytes.
adding MD5 sums
* DONE (SNPchip)