Ruuid 1.20.0
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Ruuid | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/Ruuid.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'Ruuid/DESCRIPTION' ... OK
* this is package 'Ruuid' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ruuid' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Ruuid-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Ruuid-manual.tex ... OK
* checking Ruuid-manual.tex using pdflatex ... OK
* Installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/local/bin/pkg-config
checking for glib-config... /usr/local/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include
checking PKG_LIBS... -L/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib -lglib-2.0 -lintl
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c Rinit.c -o Rinit.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c Ruuid.c -o Ruuid.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c clear.c -o clear.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c compare.c -o compare.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c copy.c -o copy.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c gen_uuid.c -o gen_uuid.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c isnull.c -o isnull.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c pack.c -o pack.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c parse.c -o parse.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c unpack.c -o unpack.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c unparse.c -o unparse.o
unparse.c: In function 'uuid_unparse':
unparse.c:26: warning: format '%08x' expects type 'unsigned int', but argument 3 has type 'guint32'
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -c uuid_time.c -o uuid_time.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ruuid.so Rinit.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o unpack.o unparse.o uuid_time.o -L/Library/Frameworks/GTK+.framework/Versions/2.14.X11/Resources/lib -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'Ruuid'
Formats: text html latex example
Ruuid-class text html latex example
getuuid text html latex example
uuidt-class text html latex example
** building package indices ...
* DONE (Ruuid)