Rredland 1.8.0
VJ Carey
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Rredland | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.6) / i386 | ERROR | skipped | skipped |
INSTALLATION WITH 'R CMD INSTALL --library=Rredland.buildbin-libdir Rredland_1.8.0.tar.gz'
* Installing *source* package 'Rredland' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
checking for pkg-config... /usr/local/bin/pkg-config
checking for redland-config... /usr/local/bin/redland-config
checking for redland... yes
checking PKG_CFLAGS... -I/usr/local/include
checking PKG_LIBS... -L/usr/local/lib -lrdf -lrasqal -lraptor
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -c Rredl.c -o Rredl.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rredland.so Rredl.o -L/usr/local/lib -lrdf -lrasqal -lraptor -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** exec
** inst
** preparing package for lazy loading
Loading required package: graph
** help
>>> Building/Updating help pages for package 'Rredland'
Formats: text html latex example
Note: removing empty section \value in file 'cleanXSDT.Rd'
Note: removing empty section \note in file 'cleanXSDT.Rd'
Note: removing empty section \references in file 'cleanXSDT.Rd'
Note: removing empty section \examples in file 'cleanXSDT.Rd'
Note: removing empty section \seealso in file 'cleanXSDT.Rd'
cleanXSDT text html latex
Note: removing empty section \value in file 'getProperties.Rd'
Note: removing empty section \details in file 'getProperties.Rd'
getProperties text html latex example
gordb text html latex example
Note: removing empty section \references in file 'makeRedlURI.Rd'
makeRedlURI text html latex example
Note: removing empty section \value in file 'readRDF.Rd'
Note: removing empty section \details in file 'readRDF.Rd'
Note: removing empty section \note in file 'readRDF.Rd'
Note: removing empty section \references in file 'readRDF.Rd'
Note: removing empty section \seealso in file 'readRDF.Rd'
readRDF text html latex example
redlModel-class text html latex example
redlWorld-class text html latex example
** building package indices ...
* DONE (Rredland)
INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --library=Rredland.buildbin-libdir --libs-only Rredland_1.8.0.tar.gz'
* Installing *source* package 'Rredland' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
checking for pkg-config... /usr/local/bin/pkg-config
checking for redland-config... /usr/local/bin/redland-config
checking for redland... yes
checking PKG_CFLAGS... -I/usr/local/include
checking PKG_LIBS... -L/usr/local/lib -lrdf -lrasqal -lraptor
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc -I/usr/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -c Rredl.c -o Rredl.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rredland.so Rredl.o -L/usr/local/lib -lrdf -lrasqal -lraptor -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/usr/libexec/gcc/powerpc-apple-darwin8/4.2.1/ld: warning /usr/local/lib/librdf.dylib cputype (7, architecture i386) does not match cputype (18) for specified -arch flag: ppc (file not loaded)
/usr/libexec/gcc/powerpc-apple-darwin8/4.2.1/ld: warning /usr/local/lib/librasqal.dylib cputype (7, architecture i386) does not match cputype (18) for specified -arch flag: ppc (file not loaded)
/usr/libexec/gcc/powerpc-apple-darwin8/4.2.1/ld: warning /usr/local/lib/libraptor.dylib cputype (7, architecture i386) does not match cputype (18) for specified -arch flag: ppc (file not loaded)
* DONE (Rredland)