Rintact 1.4.0
Tony Chiang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Rintact | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/Rintact.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'Rintact/DESCRIPTION' ... OK
* this is package 'Rintact' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rintact' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eListHandler : startElement: no visible binding for '<<-' assignment to
‘curEL’
eListHandler : startElement: no visible binding for global variable
‘curEL’
eListHandler : text: no visible binding for global variable ‘curEL’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating Rintact-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rintact-manual.tex ... OK
* checking Rintact-manual.tex using pdflatex ... OK
* Installing *source* package 'Rintact' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: XML
Loading required package: graph
Attaching package: 'graph'
The following object(s) are masked from package:XML :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:utils :
head,
tail
Loading required package: RBGL
** help
>>> Building/Updating help pages for package 'Rintact'
Formats: text html latex example
bait text html latex example
complexEntry text html latex
complexes text html latex example
eListHandler text html latex example
intactComplex text html latex
intactGraph text html latex
intactHyperGraph text html latex
intactInteraction text html latex
Note: removing empty section \examples in file 'intactXML2Graph.Rd'
intactXML2Graph text html latex
interactionEntry text html latex
interactions text html latex example
interactors text html latex example
Note: removing empty section \references in file 'list2Matrix.Rd'
list2Matrix text html latex example
organismName text html latex example
prey text html latex example
psi25interaction text html latex example
releaseDate text html latex example
Note: removing empty section \examples in file 'separateXMLDataByExpt.Rd'
separateXMLDataByExpt text html latex
taxId text html latex example
translateIntactID text html latex example
translateNodeID text html latex example
** building package indices ...
* DONE (Rintact)