RdbiPgSQL 1.16.0
Jianhua Zhang
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/RdbiPgSQL | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/RdbiPgSQL.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'RdbiPgSQL/DESCRIPTION' ... OK
* this is package 'RdbiPgSQL' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RdbiPgSQL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'dbColumnInfo.PgSQL.result':
dbColumnInfo.PgSQL.result
S3 methods shown with full name in documentation object 'dbReadTable.PgSQL.conn':
dbReadTable.PgSQL.conn
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating RdbiPgSQL-Ex.R ... OK
* checking examples ... OK
* creating RdbiPgSQL-manual.tex ... OK
* checking RdbiPgSQL-manual.tex using pdflatex ... OK
* Installing *source* package 'RdbiPgSQL' ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/postgresql/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/local/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include/pgsql -I/usr/local/include -fPIC -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386 -I/usr/local/include/pgsql -I/usr/local/include -fPIC -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: 'mkInteger' defined but not used
PgSQL.h:18: warning: 'mkLogical' defined but not used
PgSQL.h:27: warning: 'mkString_safe' defined but not used
PgSQL.h:33: warning: 'fetchPgString' defined but not used
PgSQL.h:46: warning: 'fetchPgInteger' defined but not used
PgSQL.h:66: warning: 'fetchPgDouble' defined but not used
PgSQL.h:89: warning: 'fetchPgLogical' defined but not used
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** preparing package for lazy loading
Loading required package: Rdbi
** help
>>> Building/Updating help pages for package 'RdbiPgSQL'
Formats: text html latex example
PgSQL text html latex
dbAppendTable.PgSQL.conn text html latex
Note: removing empty section \usage in file 'dbAppendTable.Rd'
Note: removing empty section \arguments in file 'dbAppendTable.Rd'
dbAppendTable text html latex
dbClearResult.PgSQL.result text html latex
dbColumnInfo.PgSQL.result text html latex
dbConnect.PgSQL text html latex
dbConnectionInfo.PgSQL.conn text html latex
dbDisconnect.PgSQL.conn text html latex
dbGetQuery.PgSQL.conn text html latex
dbGetResult.PgSQL.result text html latex
dbListTables.PgSQL.conn text html latex
dbReadTable.PgSQL.conn text html latex
dbResultInfo.PgSQL.result text html latex
dbSendQuery.PgSQL.conn text html latex
dbWriteTable.PgSQL.conn text html latex
Note: removing empty section \usage in file 'internal.Rd'
Note: removing empty section \arguments in file 'internal.Rd'
internal text html latex
psql text html latex
** building package indices ...
* DONE (RdbiPgSQL)