PROcess 1.18.0
Xiaochun Li
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/PROcess | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/PROcess.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'PROcess/DESCRIPTION' ... OK
* this is package 'PROcess' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PROcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'rmBaseline':
rmBaseline
Code: function(fldr, bseoffrda = NULL, breaks = 200, qntl = 0, method
= "loess", bw = 0.1, SpecNames = list.files(fldr,
pattern = "\\.*csv\\.*"))
Docs: function(fldr, bseoffrda = NULL, breaks = 200, qntl = 0, method
= "loess", bw = 0.1, SpecNames = list.files(fldr,
pattern = "\.*csv\.*"))
Mismatches in argument default values:
Name: 'SpecNames' Code: list.files(fldr, pattern = "\\.*csv\\.*") Docs: list.files(fldr, pattern = "\.*csv\.*")
* checking Rd \usage sections ... OK
* creating PROcess-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PROcess-manual.tex ... OK
* checking PROcess-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.3-bioc/meat/PROcess.Rcheck/00check.log
for details
* Installing *source* package 'PROcess' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Icens
Loading required package: survival
Loading required package: splines
** help
>>> Building/Updating help pages for package 'PROcess'
Formats: text html latex example
align text html latex
aveSpec text html latex example
avesd text html latex
binning text html latex
bslnoff text html latex example
gelmap text html latex
getMzs text html latex
getPeaks text html latex example
getPeaks2 text html latex
intg text html latex example
is.multiple text html latex example
isPeak text html latex example
lnn text html latex
peaks text html latex example
pk2bmkr text html latex example
quality text html latex example
read.files text html latex
renorm text html latex example
rmBaseline text html latex example
specZoom text html latex example
** building package indices ...
* DONE (PROcess)