Icens 1.14.0
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Icens | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/Icens.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Icens' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.icsurv':
plot.icsurv
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating Icens-Ex.R ... OK
* checking examples ... OK
* checking tests ...
Running 'testbv.R'
Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
< [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -1.436708e-16
---
> [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16
OK
OK
* creating Icens-manual.tex ... OK
* checking Icens-manual.tex using pdflatex ... OK
* Installing *source* package 'Icens' ...
** R
** data
** preparing package for lazy loading
Loading required package: survival
Loading required package: splines
** help
>>> Building/Updating help pages for package 'Icens'
Formats: text html latex example
BVcliques text html latex example
BVclmat text html latex example
BVsupport text html latex example
Bisect text html latex
EM text html latex example
EMICM text html latex example
ISDM text html latex example
Icens-internal text html latex
MLEintvl text html latex example
Maclist text html latex example
Macmat text html latex example
PGM text html latex example
PMGA text html latex
Plotboxes text html latex example
VEM text html latex example
cmv text html latex example
cosmesis text html latex example
hiv text html latex example
icsurv text html latex
plot.icsurv text html latex example
pruitt text html latex example
** building package indices ...
* DONE (Icens)