GenomeGraphs 1.2.3
Steffen Durinck
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GenomeGraphs | | Last Changed Rev: 37329 / Revision: 38965 | | Last Changed Date: 2009-02-11 18:53:22 -0800 (Wed, 11 Feb 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.2.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GenomeGraphs-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GenomeGraphs-manual.tex ... OK
* checking GenomeGraphs-manual.tex using pdflatex ... OK
* Installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: biomaRt
Loading required package: grid
** help
>>> Building/Updating help pages for package 'GenomeGraphs'
Formats: text html latex example
AnnotationTrack-class text html latex example
BaseTrack-class text html latex example
DisplayPars-class text html latex example
DisplayPars text html latex example
ExonArray-class text html latex example
Gene-class text html latex example
GeneModel-class text html latex example
GeneRegion-class text html latex example
GenericArray-class text html latex example
GenomeAxis-class text html latex example
HighlightRegion-class text html latex example
Ideogram-class text html latex example
Legend-class text html latex example
MappedRead-class text html latex example
Overlay-class text html latex example
RectangleOverlay-class text html latex example
Segmentable-class text html latex example
Segmentation-class text html latex example
TextOverlay-class text html latex example
Title-class text html latex example
Transcript-class text html latex example
TranscriptRegion-class text html latex example
cn text html latex example
Note: removing empty section \examples in file 'drawGD.Rd'
drawGD text html latex
exonProbePos text html latex example
gdObject-class text html latex example
gdPlot text html latex example
Note: removing empty section \examples in file 'geneBiomart.Rd'
geneBiomart text html latex
Note: removing empty section \examples in file 'geneRegionBiomart.Rd'
geneRegionBiomart text html latex
getPar text html latex example
Note: removing empty section \references in file 'ideogramTab.Rd'
ideogramTab text html latex example
intensity text html latex example
Note: removing empty section \details in file 'makeAnnotationTrack.Rd'
makeAnnotationTrack text html latex example
makeBaseTrack text html latex example
makeExonArray text html latex example
makeGene text html latex example
makeGeneModel text html latex example
makeGeneRegion text html latex example
makeGenericArray text html latex example
makeGenomeAxis text html latex example
Note: removing empty section \details in file 'makeIdeogram.Rd'
makeIdeogram text html latex example
makeLegend text html latex example
makeRectangleOverlay text html latex example
makeSegmentation text html latex example
makeTextOverlay text html latex example
makeTitle text html latex example
makeTranscript text html latex example
probestart text html latex example
segEnd text html latex example
segStart text html latex example
segments text html latex example
Note: removing empty section \source in file 'seqDataEx.Rd'
seqDataEx text html latex example
setPar text html latex example
showDisplayOptions text html latex example
unrData text html latex example
unrNProbes text html latex example
unrPositions text html latex example
yeastCons1 text html latex example
** building package indices ...
* DONE (GenomeGraphs)