GeneSelector 1.2.0
Martin Slawski
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GeneSelector | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/GeneSelector.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'GeneSelector/DESCRIPTION' ... OK
* this is package 'GeneSelector' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSelector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RankingPermutation,matrix-numeric: no visible binding for global
variable ‘test’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GeneSelector-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneSelector-manual.tex ... OK
* checking GeneSelector-manual.tex using pdflatex ... OK
* Installing *source* package 'GeneSelector' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "toplist": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "toplist": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
Warning in conformMethod(signature, mnames, fnames, f, fdef, definition) :
In method for function "GenerateBootMatrix": formal arguments in method and function do not appear in the same order
Warning in rematchDefinition(definition, fdef, mnames, fnames, signature) :
Arguments of method and generic are not in the same order
** help
>>> Building/Updating help pages for package 'GeneSelector'
Formats: text html latex example
AdjustPvalues text html latex example
AggregateBayes-methods text html latex
AggregateBayes text html latex example
AggregatePCA-methods text html latex
AggregatePCA text html latex
AggregatePenalty-methods text html latex
AggregatePenalty text html latex
AggregateSimple-methods text html latex
AggregateSimple text html latex example
AggregatedRanking-class text html latex
BootMatrix-class text html latex
CombinedRanking-class text html latex
FoldMatrix-class text html latex
GeneRanking-class text html latex
GeneSelector-methods text html latex
GeneSelector-package text html latex
GeneSelector text html latex example
GenerateBootMatrix-methods text html latex
GenerateBootMatrix text html latex example
GenerateFoldMatrix-methods text html latex
GenerateFoldMatrix text html latex example
GetAlpha text html latex example
GetRepeatRanking-methods text html latex
GetRepeatRanking text html latex example
GetStabilityGLM-methods text html latex
GetStabilityGLM text html latex
GetStabilityLm-methods text html latex
GetStabilityLm text html latex example
GetStabilityOverlap-methods text html latex
GetStabilityOverlap text html latex example
GetStabilityPCA-methods text html latex
GetStabilityPCA text html latex
HeatmapMethods-methods text html latex
HeatmapMethods text html latex example
PCAMethods-methods text html latex
PCAMethods text html latex
PCAMethodsResult-class text html latex
RankingBaldiLong-methods text html latex
RankingBaldiLong text html latex example
RankingBstat-methods text html latex
RankingBstat text html latex example
RankingEbam-methods text html latex
RankingEbam text html latex example
RankingFC-methods text html latex
RankingFC text html latex example
RankingFoxDimmic-methods text html latex
RankingFoxDimmic text html latex example
RankingGap-methods text html latex
RankingGap text html latex example
RankingLimma-methods text html latex
RankingLimma text html latex example
RankingPermutation-methods text html latex
RankingPermutation text html latex example
RankingSam-methods text html latex
RankingSam text html latex example
RankingShrinkageT-methods text html latex
RankingShrinkageT text html latex example
RankingSoftthresholdT-methods text html latex
RankingSoftthresholdT text html latex example
RankingTstat-methods text html latex
RankingTstat text html latex example
RankingWelchT-methods text html latex
RankingWelchT text html latex example
RankingWilcEbam-methods text html latex
RankingWilcEbam text html latex example
RankingWilcoxon-methods text html latex
RankingWilcoxon text html latex example
RecoveryScore text html latex example
RepeatRanking-class text html latex
StabilityGLM-class text html latex
StabilityLm-class text html latex
StabilityOverlap-class text html latex
StabilityPCA-class text html latex
internals text html latex
join-methods text html latex
join text html latex
plot,AggregatedRanking text html latex
plot,CombinedRanking text html latex
plot,RepeatRanking text html latex
plot,StabilityLm text html latex
plot,StabilityOverlap text html latex
samplingcontrol text html latex
summary,GeneRanking text html latex
summary,StabilityOverlap text html latex
toplist-methods text html latex
toydata text html latex example
variance,RepeatRanking text html latex
** building package indices ...
* DONE (GeneSelector)