GGtools 3.0.0 Vince Carey
Bioconductor Changelog | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GGtools | Last Changed Rev: 34811 / Revision: 38965 | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/GGtools.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'GGtools/DESCRIPTION' ... OK
* this is package 'GGtools' version '3.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGtools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... NOTE
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Portable packages use only ASCII characters in their datasets.
* creating GGtools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GGtools-manual.tex ... OK
* checking GGtools-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/GGtools.Rcheck
---------- Making package GGtools ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package GGtools for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GGBase
Loading required package: GSEABase
Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: xtable
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Loading required package: snpMatrix
Loading required package: survival
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Loading required package: geneplotter
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
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Attaching package: 'IRanges'
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cbind,
rbind,
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Attaching package: 'Biostrings'
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Loading required package: rtracklayer
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installing man source files
installing indices
Loading required package: methods
not zipping data
installing help
>>> Building/Updating help pages for package 'GGtools'
Formats: text html latex example chm
gwSnpTests text html latex example chm
hbTestResults-class text html latex example chm
hbTests-methods text html latex example chm
hmceuB36.2021 text html latex example chm
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snpm2mapLD text html latex example chm
Note: unmatched right brace in file 'snpm2phase.Rd' on or after line 12
Note: unmatched right brace in file 'snpm2phase.Rd' on or after line 12
snpm2phase text html latex example chm
strMultPop text html latex example chm
topSnps-methods text html latex chm
trackSet-methods text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\GGtools.Rcheck\00_pkg_src\GGtools\chm\GGtools.chm
Compile time: 0 minutes, 0 seconds
12 Topics
49 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\GGtools.Rcheck\00_pkg_src\GGtools\chm\GGtools.chm, 28,696 bytes
Compression decreased file by 14,952 bytes.
adding MD5 sums
* DONE (GGtools)