DynDoc 1.20.0
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/DynDoc | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/DynDoc.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DynDoc' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
editVignetteCode : copyEnv: no visible global function definition for
'l2e'
getVignette: no visible global function definition for
'buildVersionNumber'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'getPkgVigList':
getPkgVigList
Code: function(pkg, vigDescFun = baseVigDesc, vigPath = "/doc/",
vigExt = "\\.(Rnw|Snw|rnw|snw|Rtex)$", pkgVers = TRUE)
Docs: function(pkg, vigDescFun = baseVigDesc, vigPath = "/doc/",
vigExt = "\.(Rnw|Snw|rnw|snw|Rtex)$", pkgVers = TRUE)
Mismatches in argument default values:
Name: 'vigExt' Code: "\\.(Rnw|Snw|rnw|snw|Rtex)$" Docs: "\.(Rnw|Snw|rnw|snw|Rtex)$"
* checking Rd \usage sections ... OK
* creating DynDoc-Ex.R ... OK
* checking examples ... OK
* creating DynDoc-manual.tex ... OK
* checking DynDoc-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.3-bioc/meat/DynDoc.Rcheck/00check.log
for details
* Installing *source* package 'DynDoc' ...
** R
** preparing package for lazy loading
Creating a new generic function for "summary" in "DynDoc"
** help
>>> Building/Updating help pages for package 'DynDoc'
Formats: text html latex example
DynDoc-class text html latex
SweaveOptions-class text html latex
Vignette-class text html latex
chunkList-class text html latex example
codeChunk-class text html latex example
getPkgVigList text html latex example
getVignette text html latex
getVignetteCode text html latex
getVignetteHeader text html latex
tangleToR text html latex example
vignetteCode-class text html latex
** building package indices ...
* DONE (DynDoc)