BGmix 1.2.0
Alex Lewin
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BGmix | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/BGmix.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'BGmix/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BGmix' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BGmix' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BGmix-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BGmix-manual.tex ... OK
* checking BGmix-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/BGmix.Rcheck
---------- Making package BGmix ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making BGmix_main.d from BGmix_main.cpp
making rundir.d from rundir.cpp
making updates_BGmix.d from updates_BGmix.cpp
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -O2 -Wall -c BGmix_main.cpp -o BGmix_main.o
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -O2 -Wall -c rundir.cpp -o rundir.o
g++ -I ../boostIncl -Ie:/biocbld/bbs-2.3-bioc/R/include -DUSING_R -O2 -Wall -c updates_BGmix.cpp -o updates_BGmix.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i BGmix_res.rc -o BGmix_res.o
g++ -shared -s -o BGmix.dll BGmix.def BGmix_main.o rundir.o updates_BGmix.o BGmix_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package BGmix for lazy loading
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'BGmix'
Formats: text html latex example chm
BGmix-package text html latex example chm
BGmix text html latex example chm
EstimatePi0 text html latex example chm
FDRforTailPP text html latex example chm
FDRplotTailPP text html latex example chm
TailPP text html latex example chm
calcFDR text html latex example chm
ccParams text html latex example chm
ccPred text html latex example chm
ccSummary text html latex example chm
ccTrace text html latex example chm
histTailPP text html latex example chm
plotBasic text html latex example chm
plotCompare text html latex example chm
plotFDR text html latex example chm
plotMixDensity text html latex example chm
plotPredChecks text html latex example chm
plotTrace text html latex example chm
readBGX text html latex chm
ss text html latex chm
ybar text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\BGmix.Rcheck\00_pkg_src\BGmix\chm\BGmix.chm
Compile time: 0 minutes, 0 seconds
22 Topics
65 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\BGmix.Rcheck\00_pkg_src\BGmix\chm\BGmix.chm, 38,508 bytes
Compression decreased file by 33,251 bytes.
adding MD5 sums
* DONE (BGmix)