AnnotationDbi 1.4.3
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| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/AnnotationDbi | | Last Changed Rev: 37298 / Revision: 38965 | | Last Changed Date: 2009-02-10 12:47:12 -0800 (Tue, 10 Feb 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* preparing 'AnnotationDbi':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst303611007
---------- Making package AnnotationDbi ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package AnnotationDbi for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'AnnotationDbi'
Formats: text html latex example chm
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
Note: removing empty section \value in file 'AnnDbBimap-envirAPI.Rd'
AnnDbBimap-envirAPI text html latex example chm
AnnDbObj-class text html latex example chm
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
Note: removing empty section \details in file 'AnnDbPkg-checker.Rd'
AnnDbPkg-checker text html latex example chm
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
Note: removing empty section \details in file 'AnnDbPkg-maker.Rd'
AnnDbPkg-maker text html latex example chm
AnnotationDbi-internals text html latex chm
Bimap-direction text html latex example chm
Bimap-keys text html latex example chm
Bimap-toTable text html latex example chm
Bimap text html latex example chm
Note: removing empty section \value in file 'BimapFormatting.Rd'
Note: removing empty section \value in file 'BimapFormatting.Rd'
BimapFormatting text html latex example chm
GOTerms-class text html latex example chm
make_eg_to_go_map text html latex example chm
sqlForge-makeARABIDOPSISCHIPDB text html latex example chm
sqlForge-makeCHIPDB text html latex example chm
sqlForge-makeYEASTDB text html latex example chm
sqlForge-popARABIDOPSISCHIPDB text html latex example chm
sqlForge-popCHIPDB text html latex example chm
sqlForge-popDB text html latex example chm
sqlForge-popYEASTCHIPDB text html latex example chm
sqlForge-wrapDBPackages text html latex example chm
toSQLStringSet text html latex example chm
unlist2 text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\AnnotationDbi\chm\AnnotationDbi.chm
Compile time: 0 minutes, 1 second
23 Topics
364 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\AnnotationDbi\chm\AnnotationDbi.chm, 63,490 bytes
Compression decreased file by 141,993 bytes.
adding MD5 sums
* DONE (AnnotationDbi)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/AFFYHUEX.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/BOVINE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/BOVINECHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CANINE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CANINECHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CHICKEN.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/CHICKENCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ECOLI.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ECOLICHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/FLY.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/FLYCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/GO.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMAN.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/HUMANCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDDROME.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDHOMSA.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDMUSMU.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDRATNO.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/INPARANOIDSACCE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/MALARIA.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/MOUSE.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/MOUSECHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/PFAM.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/PIG.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/PIGCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/RAT.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/RATCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/WORM.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/WORMCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEAST.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ZEBRAFISH.DB/inst/extdata' is empty
WARNING: directory 'AnnotationDbi/inst/AnnDbPkg-templates/ZEBRAFISHCHIP.DB/inst/extdata' is empty
* building 'AnnotationDbi_1.4.3.tar.gz'