Agi4x44PreProcess 1.2.0
Pedro Lopez-Romero
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/Agi4x44PreProcess | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating Agi4x44PreProcess-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Agi4x44PreProcess-manual.tex ... OK
* checking Agi4x44PreProcess-manual.tex using pdflatex ... OK
* Installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
>>> Building/Updating help pages for package 'Agi4x44PreProcess'
Formats: text html latex example
Agi4x44PreProcess-package text html latex example
BGandNorm text html latex example
BoxPlot text html latex example
CV.rep.probes text html latex example
HeatMap text html latex example
MVAplotMED text html latex example
MVAplotMEDctrl text html latex example
PCAplot text html latex example
RLE text html latex example
boxplotNegCtrl text html latex example
build.eset text html latex example
build.mappings text html latex example
countFLAG text html latex
dd text html latex example
ensembl.htmlpage text html latex example
filter.NonUnifOL text html latex example
filter.PopnOL text html latex example
filter.control text html latex example
filter.isfound text html latex example
filter.nas text html latex
filter.probes text html latex example
filter.saturated text html latex example
filter.wellaboveBG text html latex example
filter.wellaboveNEG text html latex example
filterFLAG text html latex
filterFLAGall text html latex
filterNAS text html latex
filterWellAboveSIGNALv2 text html latex
genes.rpt.agi text html latex example
getTDRows3 text html latex
gsea.files text html latex example
hierclus text html latex example
paste.character text html latex
plotDensity text html latex example
read.AgilentFE text html latex example
read.targets text html latex example
subCHR text html latex
summarize.probe text html latex example
targets text html latex example
write.control.out text html latex
write.eset text html latex example
write.filt.out text html latex
** building package indices ...
* DONE (Agi4x44PreProcess)