xps 1.0.2
Christian Stratowa
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/xps | | Last Changed Rev: 32964 / Revision: 33132 | | Last Changed Date: 2008-07-29 14:50:16 -0700 (Tue, 29 Jul 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/xps.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'xps/DESCRIPTION' ... OK
* this is package 'xps' version '1.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xps' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating xps-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating xps-manual.tex ... OK
* checking xps-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/xps.Rcheck
---------- Making package xps ------------
testing for presence of ROOT...
found root.exe of ROOT in directory C:/root/bin...OK
testing for presence of MSVC++...
found Visual C++ compiler in directory C:\Program Files\Microsoft Visual Studio 9.0\VC/bin...OK
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
running src/Makefile.win ...
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TMLMath.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
TMLMath.cxx
TMLMath.cxx(1109) : warning C4005: 'xmax' : macro redefinition
TMLMath.cxx(1060) : see previous definition of 'xmax'
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TStat.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
TStat.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c StatUtils.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
StatUtils.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSBase.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSBase.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSUtils.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSUtils.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSSchemes.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSSchemes.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSDataTypes.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSDataTypes.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSProjectHandler.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSProjectHandler.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSData.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSData.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSProcessing.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSProcessing.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSHybridizer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSHybridizer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSSelector.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSSelector.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSNormalizer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSNormalizer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSPreProcessing.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSPreProcessing.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSNormation.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSNormation.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSFilter.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSFilter.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSAnalyzer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSAnalyzer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSAnalysis.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSAnalysis.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c rwrapper.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
rwrapper.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c xpsDict.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
xpsDict.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/link" /dll /def:xps.def /out:xps.dll fp10.obj -opt:noref -nologo -include:_G__cpp_setupG__Hist -include:_G__cpp_setupG__Graf1 -include:_G__cpp_setupG__G3D -include:_G__cpp_setupG__GPad -include:_G__cpp_setupG__Tree -include:_G__cpp_setupG__Rint -include:_G__cpp_setupG__PostScript -include:_G__cpp_setupG__Matrix -include:_G__cpp_setupG__Physics "C:/root/lib/libCore.lib" "C:/root/lib/libCint.lib" "C:/root/lib/libHist.lib" "C:/root/lib/libGraf.lib" "C:/root/lib/libGraf3d.lib" "C:/root/lib/libGpad.lib" "C:/root/lib/libTree.lib" "C:/root/lib/libRint.lib" "C:/root/lib/libPostscript.lib" "C:/root/lib/libMatrix.lib" "C:/root/lib/libPhysics.lib" "C:/root/lib/libNet.lib" "C:/root/lib/libRIO.lib" "C:/root/lib/libMathCore.lib" "C:/root/lib/libGui.lib" "C:/root/lib/libGraf.lib" "C:/root/lib/libGpad.lib" *.obj
Creating library xps.lib and object xps.exp
... done
installing DLL
installing R files
installing inst files
preparing package xps for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'xps'
Formats: text html latex example chm
AnalysisTreeSet-class text html latex example chm
CallTreeSet-class text html latex example chm
DataTreeSet-class text html latex example chm
ExprTreeSet-class text html latex example chm
Filter-class text html latex example chm
FilterTreeSet-class text html latex example chm
PreFilter-class text html latex example chm
PreFilter-constructor text html latex example chm
ProcesSet-class text html latex example chm
ProjectInfo-class text html latex example chm
ProjectInfo-constructor text html latex example chm
ROOT text html latex chm
SchemeTreeSet-class text html latex example chm
TreeSet-class text html latex example chm
UniFilter-class text html latex example chm
UniFilter-constructor text html latex example chm
addData-methods text html latex example chm
attachBgrd-methods text html latex chm
attachInten-methods text html latex example chm
attachMask-methods text html latex example chm
bgcorrect text html latex example chm
boxplot-methods text html latex example chm
boxplot.dev text html latex chm
callFilter-methods text html latex example chm
callplot-methods text html latex chm
cvFilter-methods text html latex example chm
dabg.call text html latex example chm
diffFilter-methods text html latex example chm
existsROOTFile text html latex example chm
export text html latex example chm
export.filter text html latex chm
export.root text html latex example chm
express text html latex example chm
fcFilter-methods text html latex example chm
gapFilter-methods text html latex example chm
getChipName text html latex example chm
getChipType text html latex example chm
getDatatype text html latex example chm
getNameType text html latex example chm
getNumberTrees text html latex example chm
getProbeInfo text html latex example chm
getTreeData-methods text html latex chm
getTreeNames text html latex example chm
highFilter-methods text html latex example chm
hist-methods text html latex example chm
image-methods text html latex chm
image.dev text html latex example chm
import.data text html latex example chm
import.exon.scheme text html latex example chm
import.expr.scheme text html latex example chm
import.genome.scheme text html latex example chm
initialize-methods text html latex chm
isROOTFile text html latex example chm
lowFilter-methods text html latex example chm
madFilter-methods text html latex example chm
mas4 text html latex example chm
mas5 text html latex example chm
mas5.call text html latex example chm
mboxplot-methods text html latex example chm
mvaplot-methods text html latex chm
mvaplot.dev text html latex chm
normalize text html latex example chm
pm-methods text html latex example chm
pmplot-methods text html latex example chm
prefilter text html latex example chm
quantileFilter-methods text html latex example chm
ratioFilter-methods text html latex example chm
rawCELName-methods text html latex example chm
rma text html latex example chm
root.browser-methods text html latex chm
root.data text html latex example chm
root.density text html latex example chm
root.graph1D text html latex example chm
root.graph2D text html latex example chm
root.hist1D text html latex example chm
root.hist2D text html latex example chm
root.hist3D text html latex example chm
root.image text html latex example chm
root.mvaplot text html latex example chm
root.scheme text html latex example chm
summarize text html latex example chm
type2Exten text html latex example chm
uniTest-methods text html latex example chm
unifilter text html latex example chm
unitestFilter-methods text html latex example chm
validData-methods text html latex chm
validTreetype text html latex example chm
varFilter-methods text html latex example chm
volcanoplot-methods text html latex chm
xps-package text html latex chm
xpsOptions text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\xps.Rcheck\00_pkg_src\xps\chm\xps.chm
Compile time: 0 minutes, 2 seconds
92 Topics
1,014 Local links
8 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\xps.Rcheck\00_pkg_src\xps\chm\xps.chm, 137,118 bytes
Compression decreased file by 376,017 bytes.
adding MD5 sums
* DONE (xps)