safe 2.2.0
William T. Barry
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/safe | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/safe.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'safe/DESCRIPTION' ... OK
* this is package 'safe' version '2.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'safe' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating safe-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating safe-manual.tex ... OK
* checking safe-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/safe.Rcheck
---------- Making package safe ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
preparing package safe for lazy loading
Loading required package: SparseM
Loading required package: GO
******* Deprecation warning *******:
The package 'GO' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'GO.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'safe'
Formats: text html latex example chm
SAFE-class text html latex chm
gene.results text html latex chm
getCmatrix text html latex example chm
safe-internal text html latex chm
safe text html latex example chm
safedag text html latex chm
safeplot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\safe.Rcheck\00_pkg_src\safe\chm\safe.chm
Compile time: 0 minutes, 0 seconds
8 Topics
29 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\safe.Rcheck\00_pkg_src\safe\chm\safe.chm, 30,741 bytes
Compression decreased file by 8,811 bytes.
adding MD5 sums
* DONE (safe)