installing R.css in E:/biocbld/bbs-2.2-bioc/meat/XDE.buildbin-libdir
Using auto-selected zip options 'XDE-ZIPDATA=zip XDE-HELP=ziponly'
---------- Making package XDE ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making Cholesky.d from Cholesky.cpp
making Matrix.d from Matrix.cpp
making Random.d from Random.cpp
making Structure.d from Structure.cpp
making diffExpressed_main.d from diffExpressed_main.cpp
making main.d from main.cpp
g++ -IE:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, int&)':
Cholesky.cpp:18: warning: comparison between signed and unsigned integer expressions
g++ -IE:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&, const std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&)':
Matrix.cpp:142: warning: unused variable 'k'
Matrix.cpp:144: warning: unused variable 'j'
g++ -IE:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c Random.cpp -o Random.o
Random.cpp: In constructor 'Random::Random(unsigned int)':
Random.cpp:11: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::Unif01()':
Random.cpp:49: warning: comparison between signed and unsigned integer expressions
Random.cpp:51: warning: division by zero in '#'float_expr' not supported by dump_expr#<expression error> / 0.'
Random.cpp: In member function 'int Random::Discrete(const std::vector<double, std::allocator<double> >&)':
Random.cpp:144: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::InverseWishart(double, const std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > >&)':
Random.cpp:421: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:495: warning: comparison between signed and unsigned integer expressions
Random.cpp:498: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int, std::allocator<int> > Random::Permutation(int)':
Random.cpp:904: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:929: warning: unused variable 'x'
g++ -IE:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c Structure.cpp -o Structure.o
In file included from c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/include/c++/backward/strstream:51,
from Structure.cpp:1:
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/include/c++/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
In file included from Structure.cpp:26:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:32: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*, std::allocator<Potential*> >&)':
ReportPotential.h:48: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78: warning: comparison between signed and unsigned integer expressions
In file included from Structure.cpp:27:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:32: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*, std::allocator<Update*> >&)':
ReportAcceptance.h:48: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76: warning: comparison between signed and unsigned integer expressions
In file included from ReportProbDelta.h:9,
from Structure.cpp:28:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
In file included from Structure.cpp:28:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1095: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1099: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1102: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1114: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1118: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1121: warning: comparison between signed and unsigned integer expressions
g++ -IE:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:
Random.h:17:1: warning: "PI" redefined
In file included from E:/biocbld/bbs-2.2-bioc/R/include/R.h:44,
from diffExpressed_main.cpp:1:
E:/biocbld/bbs-2.2-bioc/R/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
In file included from diffExpressed_main.cpp:19:
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:28:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:29:
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:30:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:40:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
In file included from UpdateSigma2MH.h:4,
from diffExpressed_main.cpp:42:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:42:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:43:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:44:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:45:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:46:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:47:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:139:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:53: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:196: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:211: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:218: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221: warning: comparison between signed and unsigned integer expressions
g++ -IE:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c main.cpp -o main.o
In file included from main.cpp:20:
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:29:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:30:
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*, std::allocator<Potential*> >&)':
PotentialSum.h:30: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:41:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59: warning: comparison between signed and unsigned integer expressions
In file included from UpdateSigma2MH.h:4,
from main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:50: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:76: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*, std::allocator<Potential*> >&, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:124: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*, std::allocator<double*> >&, const std::vector<double*, std::allocator<double*> >&, double)':
UpdateMultiplicativePositive.h:159: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:43:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:44:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:45:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:46:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:47:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:48:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:160: warning: comparison between signed and unsigned integer expressions
main.cpp:370: warning: comparison between signed and unsigned integer expressions
main.cpp:384: warning: comparison between signed and unsigned integer expressions
main.cpp:389: warning: comparison between signed and unsigned integer expressions
main.cpp:392: warning: comparison between signed and unsigned integer expressions
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include -i XDE_res.rc -o XDE_res.o
g++ -shared -s -o XDE.dll XDE.def Cholesky.o Matrix.o Random.o Structure.o diffExpressed_main.o main.o XDE_res.o -LE:/biocbld/bbs-2.2-bioc/R/bin -lm -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package XDE for lazy loading
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Loading required package: tools
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Creating a new generic function for "pairs" in "XDE"
Creating a new generic function for "nrow" in "XDE"
Creating a new generic function for "plot" in "XDE"
installing man source files
installing indices
zipping data
installing help
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
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Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5976\XDE\chm\XDE.chm
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Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5976\XDE\chm\XDE.chm, 46,886 bytes
Compression decreased file by 70,370 bytes.
adding MD5 sums
packaged installation of package 'XDE' as XDE_1.0.0.zip
* DONE (XDE)