ScISI 1.12.0
Tony Chiang
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/ScISI | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst384471472
---------- Making package ScISI ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package ScISI for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: YEAST
******* Deprecation warning *******:
The package 'YEAST' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'org.Sc.sgd.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: GO
******* Deprecation warning *******:
The package 'GO' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'GO.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GO,
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: annotate
Loading required package: xtable
Attaching package: 'annotate'
The following object(s) are masked from package:Rgraphviz :
toFile
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rintact
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
installing man source files
installing indices
not zipping data
installing help
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>>> Building/Updating help pages for package 'ScISI'
Formats: text html latex example chm
Desc-methods text html latex chm
ID-methods text html latex chm
JaccardCoef text html latex example chm
ScISI text html latex example chm
ScISI2html text html latex example chm
arp23 text html latex example chm
arp23G text html latex example chm
arp23Orf text html latex example chm
arp23Y2HG text html latex example chm
calcGraphStats text html latex chm
cfia text html latex example chm
cfiaOrf text html latex example chm
checkComplex text html latex chm
checkSGN text html latex chm
compBijection text html latex chm
compareComplex text html latex chm
createGODataFrame text html latex example chm
createGOMatrix text html latex example chm
createMipsDataFrame text html latex chm
createMipsMatrix text html latex example chm
createYeastDataObj text html latex example chm
dataS text html latex example chm
eAt text html latex example chm
eAt2 text html latex example chm
edgeProp text html latex chm
egEBI16112 text html latex example chm
expStats text html latex example chm
findSubComp text html latex example chm
gavin2mergeMG text html latex example chm
getAPMSData text html latex example chm
getGOInfo text html latex example chm
getLocOrfs text html latex chm
getMipsInfo text html latex example chm
getURL-methods text html latex chm
graphSumStats text html latex chm
ho2mergeMGG text html latex example chm
krogan2mergeMGGH text html latex example chm
locScISI text html latex example chm
mapping2SysG text html latex example chm
mappingsG text html latex example chm
maximizeSimilarity text html latex example chm
meanDeg text html latex chm
mergeBGMat text html latex example chm
mips2go text html latex example chm
nAt text html latex chm
nAtMap text html latex example chm
nonGenes text html latex example chm
nucComp text html latex example chm
recCompSize text html latex example chm
redundantM text html latex example chm
rmByEvi text html latex chm
runAlignment text html latex example chm
runCompareComplex text html latex example chm
subCompM text html latex example chm
sumStats text html latNote: removing empty section \examples
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ex example chm
unWantedComp text html latex example chm
unwanted text html latex example chm
xtraGO text html latex example chm
xtraGONodes text html latex chm
yeastData-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\ScISI\chm\ScISI.chm
Compile time: 0 minutes, 1 second
61 Topics
148 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\ScISI\chm\ScISI.chm, 71,938 bytes
Compression decreased file by 87,172 bytes.
adding MD5 sums
* DONE (ScISI)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'ScISI_1.12.0.tar.gz'