SNPchip 1.4.0
Robert Scharpf
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SNPchip | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/SNPchip.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'SNPchip/DESCRIPTION' ... OK
* this is package 'SNPchip' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPchip' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
centromere: no visible binding for global variable
'chromosomeAnnotation'
chromosomeSize: no visible binding for global variable
'chromosomeAnnotation'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SNPchip-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SNPchip-manual.tex ... OK
* checking SNPchip-manual.tex using pdflatex ... OK
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
Creating a new generic function for "summary" in "SNPchip"
** help
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \author
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \note
Note: removing empty section \references
Note: removing empty section \examples
>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example
HmmPredict-class text html latex example
ParESet-class text html latex example
ParSnpCallSet-class text html latex example
ParSnpCopyNumberSet-class text html latex example
ParSnpSet-class text html latex example
RatioSnpSet-class text html latex example
RatioSnpSet-methods text html latex
addFeatureData-method text html latex
alleleA text html latex
alleleB text html latex
centromere text html latex example
chromosome2numeric text html latex
chromosomeAnnotation text html latex example
chromosomeSize text html latex example
coerce-methods text html latex
crlmmOut text html latex example
cytoband text html latex example
dbSnpId text html latex example
enzyme text html latex
featureData-accessors text html latex
fragmentLength text html latex
getPar text html latex
hapmap text html latex example
hmmPredict text html latex
plotCytoband text html latex example
plotPredictions text html latex example
plotSnp text html latex example
sample.snpset text html latex example
selectSomeIndex text html latex
show-methods text html latex
showSummary text html latex
smoothSnp text html latex
snpPar text html latex example
snpset text html latex
summary-methods text html latex
updateObject-methods text html latex
** building package indices ...
* DONE (SNPchip)