PCpheno 1.2.0
Nolwenn Le Meur
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/PCpheno | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/PCpheno.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'PCpheno/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PCpheno' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PCpheno' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'summary' and siglist 'DBIObject'
generic 'summary' and siglist 'Bimap'
generic 'summary' and siglist 'AnnDbBimap'
generic 'summary' and siglist 'HyperGResultBase'
generic 'summary' and siglist 'KEGGHyperGResult'
generic 'summary' and siglist 'PFAMHyperGResult'
generic 'summary' and siglist 'LinearMResultBase'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating PCpheno-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PCpheno-manual.tex ... OK
* checking PCpheno-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.2-bioc/meat/PCpheno.Rcheck/00check.log
for details
* Installing *source* package 'PCpheno' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'PCpheno'
Formats: text html latex example
CoHyperGParams-class text html latex
CoHyperGResult-class text html latex example
Dudley text html latex example
Giaever text html latex example
HI text html latex example
KEGG2SCISI text html latex example
Kastenmayer text html latex example
Lesage text html latex example
Osterberg text html latex example
PCpheno.package text html latex
SGDphenoL text html latex example
YEASTOHNOLOG text html latex example
buildFDMat text html latex example
categoryToEntrezBuilder text html latex example
complexStatus text html latex example
deResult-class text html latex example
densityEstimate text html latex example
getDescr text html latex example
getFDgene text html latex example
graphTheory text html latex example
gtResult-class text html latex example
overlap text html latex example
plot text html latex example
ppiInteraction text html latex example
reduceM text html latex example
testResult-class text html latex
truncName text html latex example
** building package indices ...
* DONE (PCpheno)