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Package 43/260HostnameOS / ArchBUILDCHECKBUILD BIN
BSgenome 1.8.4
H. Pages
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/BSgenome
Last Changed Rev: 32998 / Revision: 33132
Last Changed Date: 2008-08-01 12:04:56 -0700 (Fri, 01 Aug 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
Package: BSgenome
Version: 1.8.4
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check BSgenome_1.8.4.tar.gz
StartedAt: 2008-08-08 04:10:10 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 04:15:12 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 301.8 seconds
RetCode: 0
Status: OK
CheckDir: BSgenome.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/BSgenome.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.8.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex using pdflatex ... OK

BSgenome.Rcheck/00install.out:

* Installing *source* package 'BSgenome' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Biostrings
** help
Note: removing empty section \details
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example 
  BSgenome-class                    text    html    latex   example
  BSgenomeForge                     text    html    latex
  available.genomes                 text    html    latex   example
  getSeq                            text    html    latex   example
  injectSNPs                        text    html    latex   example
** building package indices ...
* DONE (BSgenome)