AnnotationDbi 1.2.2
Biocore Team c/o BioC user list
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/AnnotationDbi | | Last Changed Rev: 32310 / Revision: 33132 | | Last Changed Date: 2008-06-17 00:37:39 -0700 (Tue, 17 Jun 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.2.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AnnotationDbi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AnnotationDbi-manual.tex ... OK
* checking AnnotationDbi-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/AnnotationDbi.Rcheck
---------- Making package AnnotationDbi ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package AnnotationDbi for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
installing man source files
installing indices
installing help
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \value
Note: removing empty section \value
>>> Building/Updating help pages for package 'AnnotationDbi'
Formats: text html latex example chm
AnnDbBimap-envirAPI text html latex example chm
AnnDbObj-class text html latex example chm
AnnDbPkg-checker text html latex example chm
AnnDbPkg-maker text html latex example chm
AnnotationDbi-internals text html latex chm
Bimap-direction text html latex example chm
Bimap-keys text html latex example chm
Bimap-toTable text html latex example chm
Bimap text html latex example chm
BimapFormatting text html latex example chm
GOTerms-class text html latex example chm
make_eg_to_go_map text html latex example chm
sqlForge-makeARABIDOPSISCHIPDB text html latex example chm
sqlForge-makeCHIPDB text html latex example chm
sqlForge-makeYEASTDB text html latex example chm
sqlForge-popARABIDOPSISCHIPDB text html latex example chm
sqlForge-popCHIPDB text html latex example chm
sqlForge-popDB text html latex example chm
sqlForge-popYEASTCHIPDB text html latex example chm
sqlForge-wrapDBPackages text html latex example chm
toSQLStringSet text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\AnnotationDbi.Rcheck\00_pkg_src\AnnotationDbi\chm\AnnotationDbi.chm
Compile time: 0 minutes, 0 seconds
22 Topics
341 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\AnnotationDbi.Rcheck\00_pkg_src\AnnotationDbi\chm\AnnotationDbi.chm, 59,982 bytes
Compression decreased file by 130,403 bytes.
adding MD5 sums
* DONE (AnnotationDbi)