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Package 147/264HostnameOS / ArchBUILDCHECKBUILD BIN
MCRestimate 1.11.7
Markus Ruschhaupt
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MCRestimate
Last Changed Rev: 30819 / Revision: 30951
Last Changed Date: 2008-04-03 02:44:18 -0700 (Thu, 03 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: MCRestimate
Version: 1.11.7
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check MCRestimate_1.11.7.tar.gz
StartedAt: 2008-04-09 06:34:49 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 06:44:10 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 561.1 seconds
RetCode: 0
Status: OK
CheckDir: MCRestimate.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/MCRestimate.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.11.7'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MCRestimate-manual.tex ... OK
* checking MCRestimate-manual.tex using pdflatex ... OK

MCRestimate.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/MCRestimate.Rcheck


---------- Making package MCRestimate ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  preparing package MCRestimate for lazy loading
Loading required package: e1071
Loading required package: class
Loading required package: pamr
Loading required package: cluster
Loading required package: survival
Loading required package: splines
Loading required package: randomForest
randomForest 4.5-23
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'


	The following object(s) are masked from package:randomForest :

	 combine 

Loading required package: golubEsets
Loading required package: arrayMagic
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter

******      Deprecation warning                  ***
* The package 'arrayMagic' is deprecated and will  *
* not be supported after the retirement of the     *
* exprSet class from Bioconductor.                 *
* Please consider using the NchannelSet class from *
* Biobase and functions from the limma and         *
* arrayQualityMetrics packages.                    *
****************************************************

Loading required package: gpls
Loading required package: ROC

Attaching package: 'ROC'


	The following object(s) are masked from package:genefilter :

	 AUC,
	 pAUC 

  installing man source files
  installing indices
  installing help
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 >>> Building/Updating help pages for package 'MCRestimate'
     Formats: text html latex example chm 
  ClassifierBuild                   text    html    latex   example chm
  MCRconfusion                      text    html    latex   example chm
  MCRestimate                       text    html    latex   example chm
  MCRestimateMerge                  text    html    latex   example chm
  PLR                               text    html    latex   example chm
  PLR.add.fkt                       text    html    latex           chm
  SVM.OVA.wrap                      text    html    latex           chm
  class.factor.format               text    html    latex   example chm
  gene.reduction.fkt                text    html    latex   example chm
  geneReduction                     text    html    latex   example chm
  important.variable.names          text    html    latex           chm
  indVotes                          text    html    latex   example chm
  intersectList                     text    html    latex   example chm
  plot.MCRestimate                  text    html    latex   example chm
  replace.NA                        text    html    latex           chm
  select.NA.elements                text    html    latex           chm
  whatiscorrect                     text    html    latex           chm
  wrapper.fkt                       text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm


Compile time: 0 minutes, 0 seconds
19	Topics
67	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm, 39,054 bytes
Compression decreased file by 33,598 bytes.
  adding MD5 sums

* DONE (MCRestimate)