BioC experimental data: CHECK report for pd.atdschip.tiling on moscato1

Package: pd.atdschip.tiling

Version: 0.0.6

Command: rm -rf pd.atdschip.tiling.buildbin-libdir && mkdir pd.atdschip.tiling.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pd.atdschip.tiling.buildbin-libdir pd.atdschip.tiling_0.0.6.tar.gz >pd.atdschip.tiling-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=pd.atdschip.tiling.buildbin-libdir --install="check:pd.atdschip.tiling-install.out" --force-multiarch --no-vignettes --timings pd.atdschip.tiling_0.0.6.tar.gz && mv pd.atdschip.tiling.buildbin-libdir/* pd.atdschip.tiling.Rcheck/ && rmdir pd.atdschip.tiling.buildbin-libdir

StartedAt: 2014-04-04 12:21:00 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:29:59 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 539.2 seconds

RetCode: 0

Status:  OK

CheckDir: pd.atdschip.tiling.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/pd.atdschip.tiling.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pd.atdschip.tiling/DESCRIPTION' ... OK
* this is package 'pd.atdschip.tiling' version '0.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pd.atdschip.tiling' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 256.4Mb
  sub-directories of 1Mb or more:
    data      43.3Mb
    extdata  213.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'RSQLite' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'methods' 'oligo' 'oligoClasses'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'pd.atdschip.tiling/R/all.R':
  .onLoad calls:
    require(RSQLite, quietly = TRUE)

Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
probeSequences 7.21   0.11    7.32
** running examples for arch 'x64' ... [13s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
probeSequences 6.77    0.1    6.87
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/pd.atdschip.tiling.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'pd.atdschip.tiling' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'pd.atdschip.tiling' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pd.atdschip.tiling' as pd.atdschip.tiling_0.0.6.zip
* DONE (pd.atdschip.tiling)

name	user	system	elapsed
probeSequences	7.21	0.11	7.32

name	user	system	elapsed
probeSequences	6.77	0.10	6.87