BioC experimental data: CHECK report for ceuhm3 on zin1

Package: ceuhm3

Version: 0.0.16

Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings ceuhm3_0.0.16.tar.gz

StartedAt: 2014-04-04 08:55:21 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 08:58:18 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 176.8 seconds

RetCode: 0

Status:  OK

CheckDir: ceuhm3.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.13-data-experiment/meat/ceuhm3.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ceuhm3/DESCRIPTION’ ... OK
* this is package ‘ceuhm3’ version ‘0.0.16’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ceuhm3’ can be installed ... [16s/17s] OK
* checking installed package size ... NOTE
  installed size is 45.2Mb
  sub-directories of 1Mb or more:
    data   25.9Mb
    parts  19.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘GGtools’
  All declared Imports should be used.
Package in Depends field not imported from: ‘GGBase’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘ceuhm3/R/zzz.R’:
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""))
    packageStartupMessage("available chromosomes are named ", selectSome(cn))

See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [19s/24s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
ceuhm3-package 11.849   0.34  16.347
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  ‘/home/biocbuild/bbs-2.13-data-experiment/meat/ceuhm3.Rcheck/00check.log’
for details.

* installing *source* package ‘ceuhm3’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ceuhm3)

name	user	system	elapsed
ceuhm3-package	11.849	0.340	16.347