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BioC experimental data: CHECK report for breastCancerVDX on moscato1

This page was generated on 2014-04-04 17:29:02 -0700 (Fri, 04 Apr 2014).

Package 18/181HostnameOS / ArchBUILDCHECKBUILD BIN
breastCancerVDX 1.0.6
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/breastCancerVDX
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: breastCancerVDX
Version: 1.0.6
Command: rm -rf breastCancerVDX.buildbin-libdir && mkdir breastCancerVDX.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=breastCancerVDX.buildbin-libdir breastCancerVDX_1.0.6.tar.gz >breastCancerVDX-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=breastCancerVDX.buildbin-libdir --install="check:breastCancerVDX-install.out" --force-multiarch --no-vignettes --timings breastCancerVDX_1.0.6.tar.gz && mv breastCancerVDX.buildbin-libdir/* breastCancerVDX.Rcheck/ && rmdir breastCancerVDX.buildbin-libdir
StartedAt: 2014-04-04 11:02:42 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 11:08:28 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 345.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: breastCancerVDX.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/breastCancerVDX.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'breastCancerVDX/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'breastCancerVDX' version '1.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'breastCancerVDX' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 39.6Mb
  sub-directories of 1Mb or more:
    data  39.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  vdx.rda   39.5Mb   16.9Mb       xz
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [3s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/breastCancerVDX.Rcheck/00check.log'
for details.

breastCancerVDX.Rcheck/00install.out:


install for i386

* installing *source* package 'breastCancerVDX' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'breastCancerVDX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breastCancerVDX' as breastCancerVDX_1.0.6.zip
* DONE (breastCancerVDX)

breastCancerVDX.Rcheck/examples_i386/breastCancerVDX-Ex.timings:

nameusersystemelapsed
vdx1.890.031.92

breastCancerVDX.Rcheck/examples_x64/breastCancerVDX-Ex.timings:

nameusersystemelapsed
vdx1.980.062.04