BioC experimental data: CHECK report for CCl4 on moscato1

Package: CCl4

Version: 1.0.16

Command: rm -rf CCl4.buildbin-libdir && mkdir CCl4.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CCl4.buildbin-libdir CCl4_1.0.16.tar.gz >CCl4-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=CCl4.buildbin-libdir --install="check:CCl4-install.out" --force-multiarch --no-vignettes --timings CCl4_1.0.16.tar.gz && mv CCl4.buildbin-libdir/* CCl4.Rcheck/ && rmdir CCl4.buildbin-libdir

StartedAt: 2014-04-04 11:04:29 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 11:11:57 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 447.7 seconds

RetCode: 0

Status: WARNINGS

CheckDir: CCl4.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/CCl4.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CCl4/DESCRIPTION' ... OK
* this is package 'CCl4' version '1.0.16'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CCl4' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 304.3Mb
  sub-directories of 1Mb or more:
    data      12.0Mb
    extdata  292.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  CCl4.RData           9.1Mb    2.1Mb       xz
  CCl4_RGList.RData    2.9Mb    2.0Mb       xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'validDataFiles.R' [6s]
  Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,25d4
< Attaching package: 'BiocGenerics'
< 
< The following objects are masked from 'package:parallel':
< 
<     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
<     clusterExport, clusterMap, parApply, parCapply, parLapply,
<     parLapplyLB, parRapply, parSapply, parSapplyLB
< 
< The following object is masked from 'package:stats':
< 
<     xtabs
< 
< The following objects are masked from 'package:base':
< 
<     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
<     as.data.frame, as.vector, cbind, colnames, duplicated, eval, evalq,
<     get, intersect, is.unsorted, lapply, mapply, match, mget, order,
<     paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rep.int,
<     rownames, sapply, setdiff, sort, table, tapply, union, unique,
<     unlist
< 
28,37c7,9
<     Vignettes contain introductory material; view with
<     'browseVignettes()'. To cite Bioconductor, see
<     'citation("Biobase")', and for packages 'citation("pkgname")'.
< 
< 
< Attaching package: 'limma'
< 
< The following object is masked from 'package:BiocGenerics':
< 
<     plotMA
---
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning message:
running command '"diff" -bw "D:\biocbld\bbs-2.13-data-experiment\tmpdir\RtmpUNlTG6\Rdiffad244fb82474" "D:\biocbld\bbs-2.13-data-experiment\tmpdir\RtmpUNlTG6\Rdiffbd2431051412"' had status 1 
 [9s] OK
** running tests for arch 'x64'
  Running 'validDataFiles.R' [2s]
  Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,25d4
< Attaching package: 'BiocGenerics'
< 
< The following objects are masked from 'package:parallel':
< 
<     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
<     clusterExport, clusterMap, parApply, parCapply, parLapply,
<     parLapplyLB, parRapply, parSapply, parSapplyLB
< 
< The following object is masked from 'package:stats':
< 
<     xtabs
< 
< The following objects are masked from 'package:base':
< 
<     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
<     as.data.frame, as.vector, cbind, colnames, duplicated, eval, evalq,
<     get, intersect, is.unsorted, lapply, mapply, match, mget, order,
<     paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rep.int,
<     rownames, sapply, setdiff, sort, table, tapply, union, unique,
<     unlist
< 
28,37c7,9
<     Vignettes contain introductory material; view with
<     'browseVignettes()'. To cite Bioconductor, see
<     'citation("Biobase")', and for packages 'citation("pkgname")'.
< 
< 
< Attaching package: 'limma'
< 
< The following object is masked from 'package:BiocGenerics':
< 
<     plotMA
---
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
Warning message:
running command '"diff" -bw "D:\biocbld\bbs-2.13-data-experiment\tmpdir\Rtmpo3ah75\Rdiffa2d7857f12fbe" "D:\biocbld\bbs-2.13-data-experiment\tmpdir\Rtmpo3ah75\Rdiffb2d7847514ff2"' had status 1 
 [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/CCl4.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'CCl4' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CCl4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CCl4' as CCl4_1.0.16.zip
* DONE (CCl4)

name	user	system	elapsed
CCl4	1.44	0.00	1.44

name	user	system	elapsed
CCl4	1.98	0.09	2.08

BioC experimental data: CHECK report for CCl4 on moscato1

Summary

Command output