BioC 2.13: CHECK report for EasyqpcR on zin1

Package: EasyqpcR

Version: 1.5.0

Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings EasyqpcR_1.5.0.tar.gz

StartedAt: 2014-04-05 00:54:12 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 00:55:05 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 53.5 seconds

RetCode: 0

Status:  OK

CheckDir: EasyqpcR.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.13-bioc/meat/EasyqpcR.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EasyqpcR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EasyqpcR’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EasyqpcR’ can be installed ... [5s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... NOTE
The following files look like leftovers/mistakes:
  ‘vignette_EasyqpcR.toc’
Please remove them from your package.
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.13-bioc/meat/EasyqpcR.Rcheck/00check.log’
for details.

* installing *source* package ‘EasyqpcR’ ...
** R
** data
** inst
** preparing package for lazy loading
Xlib:  extension "RANDR" missing on display ":30975.0".
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Xlib:  extension "RANDR" missing on display ":30975.0".
* DONE (EasyqpcR)

name	user	system	elapsed
Efficiency_calculation	0.104	0.000	0.106
Gene_maximisation	0.004	0.000	0.004
Gene_maximisation_cor	0.004	0.000	0.006
badCt	0.024	0.004	0.028
calData	0.236	0.004	0.289
nrmData	0.120	0.000	0.119
qPCR_run1	0.004	0.000	0.003
qPCR_run2	0.004	0.000	0.003
qPCR_run3	0.092	0.000	0.091
slope	0.012	0.000	0.013
totData	0.464	0.000	0.466