BioC 2.13: CHECK report for prebs on moscato1

Package: prebs

Version: 1.2.1

Command: rm -rf prebs.buildbin-libdir && mkdir prebs.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=prebs.buildbin-libdir prebs_1.2.1.tar.gz >prebs-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=prebs.buildbin-libdir --install="check:prebs-install.out" --force-multiarch --no-vignettes --timings prebs_1.2.1.tar.gz && mv prebs.buildbin-libdir/* prebs.Rcheck/ && rmdir prebs.buildbin-libdir

StartedAt: 2014-04-05 05:56:29 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 06:13:11 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 1001.9 seconds

RetCode: 0

Status:  OK

CheckDir: prebs.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/prebs.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'prebs/DESCRIPTION' ... OK
* this is package 'prebs' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'prebs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
  .Call("rma_c_complete_copy", ..., PACKAGE = "affy")
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [405s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
calc_prebs 381.84  13.82  398.91
** running examples for arch 'x64' ... [405s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
calc_prebs 380.33  16.57  397.32
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/prebs.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'prebs' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'prebs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'prebs' as prebs_1.2.1.zip
* DONE (prebs)

name	user	system	elapsed
calc_prebs	381.84	13.82	398.91

name	user	system	elapsed
calc_prebs	380.33	16.57	397.32