BioC 2.13: CHECK report for flowFit on moscato1

Package: flowFit

Version: 1.0.0

Command: rm -rf flowFit.buildbin-libdir && mkdir flowFit.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.0.0.tar.gz >flowFit-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.0.0.tar.gz && mv flowFit.buildbin-libdir/* flowFit.Rcheck/ && rmdir flowFit.buildbin-libdir

StartedAt: 2014-04-05 03:51:04 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 03:54:30 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 206.5 seconds

RetCode: 0

Status:  OK

CheckDir: flowFit.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/flowFit.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowFit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowFit' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowFit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'HowTo-flowFit.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [46s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
flowFit-package      20.17   0.16   20.99
proliferationFitting 16.35   0.08   16.52
** running examples for arch 'x64' ... [47s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
flowFit-package      19.65   0.16   20.89
proliferationFitting 16.18   0.11   16.59
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/flowFit.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'flowFit' ...
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowFit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFit' as flowFit_1.0.0.zip
* DONE (flowFit)

name	user	system	elapsed
flowFit-package	20.17	0.16	20.99
generationsDistance	0.01	0.00	0.02
getGenerations	1.19	0.01	1.74
logTicks	0.10	0.00	0.09
parentFitting	0.67	0.02	0.69
parentFittingData-class	0.14	0.00	0.14
proliferationFitting	16.35	0.08	16.52
proliferationFittingData-class	0.89	0.00	0.89
proliferationGrid	0	0	0
proliferationIndex	0.85	0.01	0.87

name	user	system	elapsed
flowFit-package	19.65	0.16	20.89
generationsDistance	0	0	0
getGenerations	1.04	0.01	1.06
logTicks	0.06	0.02	0.44
parentFitting	0.75	0.00	0.75
parentFittingData-class	0.31	0.00	0.31
proliferationFitting	16.18	0.11	16.59
proliferationFittingData-class	0.88	0.01	0.90
proliferationGrid	0	0	0
proliferationIndex	0.81	0.00	0.81