BioC 2.13: CHECK report for cqn on moscato1

Package: cqn

Version: 1.8.0

Command: rm -rf cqn.buildbin-libdir && mkdir cqn.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cqn.buildbin-libdir cqn_1.8.0.tar.gz >cqn-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=cqn.buildbin-libdir --install="check:cqn-install.out" --force-multiarch --no-vignettes --timings cqn_1.8.0.tar.gz && mv cqn.buildbin-libdir/* cqn.Rcheck/ && rmdir cqn.buildbin-libdir

StartedAt: 2014-04-05 03:18:07 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 03:19:18 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 71.0 seconds

RetCode: 0

Status:  OK

CheckDir: cqn.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/cqn.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cqn/DESCRIPTION' ... OK
* this is package 'cqn' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cqn' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'splines'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'mclust' 'preprocessCore' 'quantreg'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [18s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
cqn     7.85   0.28    8.21
cqnplot 6.89   0.07    6.96
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
cqn     7.75   0.16    8.31
cqnplot 6.42   0.06    6.49
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/cqn.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'cqn' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cqn' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cqn' as cqn_1.8.0.zip
* DONE (cqn)

name	user	system	elapsed
cqn	7.85	0.28	8.21
cqnplot	6.89	0.07	6.96

name	user	system	elapsed
cqn	7.75	0.16	8.31
cqnplot	6.42	0.06	6.49