BioC 2.13: CHECK report for BiocInstaller on moscato1

Package: BiocInstaller

Version: 1.12.0

Command: rm -rf BiocInstaller.buildbin-libdir && mkdir BiocInstaller.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocInstaller.buildbin-libdir BiocInstaller_1.12.0.tar.gz >BiocInstaller-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=BiocInstaller.buildbin-libdir --install="check:BiocInstaller-install.out" --force-multiarch --no-vignettes --timings BiocInstaller_1.12.0.tar.gz && mv BiocInstaller.buildbin-libdir/* BiocInstaller.Rcheck/ && rmdir BiocInstaller.buildbin-libdir

StartedAt: 2014-04-05 02:31:56 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 02:32:42 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 45.6 seconds

RetCode: 0

Status:  OK

CheckDir: BiocInstaller.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/BiocInstaller.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocInstaller/DESCRIPTION' ... OK
* this is package 'BiocInstaller' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocInstaller' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  '.updateBioconductorPackageFinish' '.updateFinish'
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
biocValid    6   0.45    7.33
** running examples for arch 'x64' ... [9s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
biocValid  6.9   0.28    7.59
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'BiocInstaller_unit_tests.R' [2s]
 [2s] OK
** running tests for arch 'x64'
  Running 'BiocInstaller_unit_tests.R' [2s]
 [2s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/BiocInstaller.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BiocInstaller' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help

install for x64

* installing *source* package 'BiocInstaller' ...
** testing if installed package can be loaded
Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help
* MD5 sums
packaged installation of 'BiocInstaller' as BiocInstaller_1.12.0.zip
* DONE (BiocInstaller)

name	user	system	elapsed
BiocUpgrade	0	0	0
biocLite	0.03	0.00	0.03
biocValid	6.00	0.45	7.33
biocVersion	0	0	0
biocinstallRepos	0	0	0
packageGroups	0.19	0.00	0.21
useDevel	0	0	0

name	user	system	elapsed
BiocUpgrade	0.02	0.00	0.01
biocLite	0.06	0.00	0.06
biocValid	6.90	0.28	7.59
biocVersion	0	0	0
biocinstallRepos	0	0	0
packageGroups	0.16	0.02	0.19
useDevel	0.01	0.00	0.01