virtualArray 1.4.0
Andreas Heider
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/virtualArray | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | [ ERROR ] | skipped | skipped |
* checking for file 'virtualArray/DESCRIPTION' ... OK
* preparing 'virtualArray':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated,
as.data.frame, cbind, colnames, duplicated, eval, get,
intersect, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rep.int, rownames,
sapply, setdiff, sort, table, tapply, union, unique, unlist
Loading required package: plyr
Loading required package: preprocessCore
Creating a generic function for 'hist' from package 'graphics' in package 'affyPLM'
Setting options('download.file.method.GEOquery'='auto')
Warning: replacing previous import 'new' when loading 'methods'
Warning: replacing previous import 'density' when loading 'stats'
Warning: replacing previous import 'installed.packages' when loading 'utils'
Warning: replacing previous import 'read.csv' when loading 'utils'
Warning: replacing previous import 'read.table' when loading 'utils'
Warning: replacing previous import 'write.table' when loading 'utils'
To support our work please cite:
Thanks.
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages
'citation("pkgname")'.
Found 1 file(s)
GSE23402_series_matrix.txt.gz
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE23nnn/GSE23402/matrix/GSE23402_series_matrix.txt.gz'
ftp data connection made, file length 6015535 bytes
opened URL
==================================================
downloaded 5.7 Mb
File stored at:
/tmp/RtmphdzdnP/GPL570.soft
Found 1 file(s)
GSE26428_series_matrix.txt.gz
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE26nnn/GSE26428/matrix/GSE26428_series_matrix.txt.gz'
ftp data connection made, file length 706298 bytes
opened URL
==================================================
downloaded 689 Kb
File stored at:
/tmp/RtmphdzdnP/GPL6480.soft
Loading required package: BiocParallel
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called 'BiocParallel'
Error: processing vignette 'virtualArray.Rnw' failed with diagnostics:
chunk 11 (label = options)
Error in eval(expr, envir, enclos) : could not find function "register"
Execution halted