Package: plateCore

Version: 1.18.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch plateCore_1.18.0.tar.gz

StartedAt: 2013-05-01 09:26:19 -0700 (Wed, 01 May 2013)

EndedAt: 2013-05-01 09:30:39 -0700 (Wed, 01 May 2013)

EllapsedTime: 260.0 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/plateCore.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'plateCore' can be installed ... [11s/12s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
panel.xyplot.flowPlate: warning in filterBoundary(filter =
  filter[[nm]], parameters = c(channel.x.name, channel.y.name), frame =
  frames[[nm]]): partial argument match of 'filter' to 'filter.object'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [133s/137s] OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
summaryStats-methods      15.768  0.136  16.029
applyControlGates-methods 15.304  0.160  16.479
mfiPlot-methods           15.294  0.146  15.672
on-methods                11.185  0.189  11.536
fpbind-methods             9.147  0.129   9.589
fixAutoFl-methods          6.678  0.140   6.916
compensate-methods         6.120  0.111   7.014
Subset-methods             5.886  0.146   6.279
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/plateCore.Rcheck/00check.log'
for details.

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (plateCore)

name	user	system	elapsed
Subset-methods	5.886	0.146	6.279
applyControlGates-methods	15.304	0.160	16.479
compensate-methods	6.120	0.111	7.014
compensationSet	0.434	0.030	0.472
densityplot-methods	1.696	0.041	1.796
fixAutoFl-methods	6.678	0.140	6.916
flowPlate-class	3.753	0.057	3.836
flowPlate-method	3.631	0.066	3.765
fpbind-methods	9.147	0.129	9.589
getGroups-methods	1.795	0.061	1.889
gutterPlot-methods	1.587	0.062	1.677
mfiPlot-methods	15.294	0.146	15.672
on-methods	11.185	0.189	11.536
panel.densityplot.flowPlate	2.361	0.053	2.465
panel.xyplot.flowPlate	2.032	0.054	2.131
plateCore-package	3.508	0.093	3.659
plateSet-methods	3.781	0.102	3.932
plotPlate-methods	4.432	0.111	4.573
prepanel.densityplot.flowPlate	2.026	0.067	2.108
prepanel.xyplot.flowPlate	1.682	0.045	1.729
setControlGates-methods	3.732	0.087	3.864
summaryStats-methods	15.768	0.136	16.029
wellAnnotation-methods	1.553	0.052	1.606
xyplot-methods	1.715	0.056	1.811