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Package 481/671HostnameOS / ArchBUILDCHECKBUILD BIN
piano 1.0.3
Leif Varemo
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/piano
Last Changed Rev: 76056 / Revision: 76155
Last Changed Date: 2013-04-25 23:35:30 -0700 (Thu, 25 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: piano
Version: 1.0.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch piano_1.0.3.tar.gz
StartedAt: 2013-05-01 09:17:10 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 09:19:37 -0700 (Wed, 01 May 2013)
EllapsedTime: 147.0 seconds
RetCode: 0
Status:  OK 
CheckDir: piano.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/piano.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'piano/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'piano' version '1.0.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'piano' can be installed ... [7s/7s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [52s/54s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
networkPlot     8.515  0.334   9.215
diffExp         8.291  0.333   9.465
runGSA          7.642  0.351   8.105
geneSetSummary  7.615  0.327   8.018
GSAsummaryTable 7.687  0.101   8.179
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

piano.Rcheck/00install.out:

* installing *source* package 'piano' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (piano)

piano.Rcheck/piano-Ex.timings:

nameusersystemelapsed
GSAsummaryTable7.6870.1018.179
consensusHeatmap0.3370.0290.391
consensusScores0.1590.0110.180
diffExp8.2910.3339.465
extractFactors0.8900.0410.935
geneSetSummary7.6150.3278.018
loadGSC0.0500.0060.057
loadMAdata0.8840.0321.057
networkPlot8.5150.3349.215
polarPlot2.2020.1202.363
runGSA7.6420.3518.105
runQC2.4680.1402.621