Package: pRoloc

Version: 0.99.7

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings pRoloc_0.99.7.tar.gz

StartedAt: 2013-01-16 05:25:22 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 05:34:40 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 558.5 seconds

RetCode: 0

Status:  OK

CheckDir: pRoloc.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/pRoloc.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRoloc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRoloc’ version ‘0.99.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRoloc’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
rfClassification   7.276  0.032   7.324
svmClassification  6.265  0.028   6.324
nnetClassification 5.797  0.008   5.824
ksvmClassification 5.408  0.032   5.450
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘pRoloc’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘pRoloc-tutorial.Rnw’ 
** testing if installed package can be loaded

* DONE (pRoloc)

name	user	system	elapsed
GenRegRes-class	0.008	0.004	0.012
chi2-methods	0.505	0.004	0.508
empPvalues	0.224	0.024	0.248
exprsToRatios-methods	0.452	0.008	0.476
getMarkers	0.052	0.004	0.057
getStockcol	0.004	0.012	0.015
knnClassification	1.476	0.008	1.493
ksvmClassification	5.408	0.032	5.450
minClassScore	0.088	0.008	0.099
minMarkers	0.088	0.004	0.092
nbClassification	4.572	0.024	4.607
nnetClassification	5.797	0.008	5.824
phenoDisco	0.008	0.000	0.009
plot2D	0.088	0.004	0.091
plotDist	0.168	0.000	0.166
plsdaClassification	0.016	0.000	0.017
rfClassification	7.276	0.032	7.324
svmClassification	6.265	0.028	6.324