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Package 436/671HostnameOS / ArchBUILDCHECKBUILD BIN
ncdfFlow 1.6.0
M. Jiang
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/ncdfFlow
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ WARNINGS ] OK 

Summary

Package: ncdfFlow
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ncdfFlow_1.6.0.tar.gz
StartedAt: 2013-05-01 08:35:03 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 08:37:22 -0700 (Wed, 01 May 2013)
EllapsedTime: 138.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: ncdfFlow.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/ncdfFlow.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ncdfFlow/DESCRIPTION' ... OK
* this is package 'ncdfFlow' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'ncdfFlow' can be installed ... [19s/22s] WARNING
Found the following significant warnings:
  trimmed_netcdf-4.2.1.1/libsrc/memio.c:323:8: warning: variable 'nciop' is used uninitialized whenever 'if' condition is true [-Wsometimes-uninitialized]
  trimmed_netcdf-4.2.1.1/libsrc/memio.c:319:8: warning: variable 'nciop' is used uninitialized whenever 'if' condition is true [-Wsometimes-uninitialized]
  trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:781:16: warning: variable 't' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:2880:8: warning: variable 'retval' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
See '/Users/biocbuild/bbs-2.12-bioc/meat/ncdfFlow.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    lib    3.8Mb
    libs   3.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [15s/16s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
ncdfFlowList-class 5.326  0.668   6.391
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/ncdfFlow.Rcheck/00check.log'
for details.

ncdfFlow.Rcheck/00install.out:

* installing *source* package 'ncdfFlow' ...
configure: search for hdf5 library in: /usr/lib
configure: found hdf5 library in: /usr/lib
configure: using bundled netcdf4 library
configure: 'found ' trimmed_netcdf-4.2.1.1 ' header sources and tar archive;using what is there.'
configure: Using the following compilation and linking flags for ncdfFlow
configure: 	PKG_CPPFLAGS=-I/usr/include
configure: 	PKG_LIBS=-L/usr/lib -lhdf5 -lhdf5_hl
configure: creating ./config.status
config.status: creating src/Makevars
** libs
/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:6: warning: overriding commands for target `ncdfFlow.so'
Makevars:24: warning: ignoring old commands for target `ncdfFlow.so'
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c bitOps.c -o bitOps.o
bitOps.c:23:27: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
                mask  = 1 << bitIndex;
                      ˜ ˜˜^˜˜˜˜˜˜˜˜˜˜
bitOps.c:30:25: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
                mask  = ˜(1 << bitIndex);
                      ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bitOps.c:95:23: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
            mask  = 1 << bitIndex;
                  ˜ ˜˜^˜˜˜˜˜˜˜˜˜˜
bitOps.c:100:21: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
            mask  = ˜(1 << bitIndex);
                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c netCDF.c -o netCDF.o
netCDF.c:34:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t chunksize[] = {1, Y, X};
                         ˜   ^
netCDF.c:34:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t chunksize[] = {1, Y, X};
                         ˜      ^
netCDF.c:40:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if ((retval = nc_def_dim(ncid, "meta",metaSize, &m_dimid)))
                  ˜˜˜˜˜˜˜˜˜˜              ^˜˜˜˜˜˜˜
netCDF.c:43:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if ((retval = nc_def_dim(ncid, "event", X, &x_dimid)))
                  ˜˜˜˜˜˜˜˜˜˜                ^
netCDF.c:45:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if ((retval = nc_def_dim(ncid, "channel", Y, &y_dimid)))
                  ˜˜˜˜˜˜˜˜˜˜                  ^
netCDF.c:47:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if ((retval = nc_def_dim(ncid, "sample", Z , &z_dimid))) // was NC_UNLIMITED Z 
                  ˜˜˜˜˜˜˜˜˜˜                 ^
netCDF.c:87:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if((retval = nc_put_att_int(ncid, varid, "eventCount", NC_INT, Z, eCount)))
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                    ^
netCDF.c:116:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t start[] = {sample, 0, 0};
                     ˜^˜˜˜˜˜
netCDF.c:117:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count[] = {1, nCol, nRow};
                     ˜   ^˜˜˜
netCDF.c:117:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count[] = {1, nCol, nRow};
                     ˜         ^˜˜˜
netCDF.c:150:68: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if((retval = nc_put_att_int(ncid, varid, "eventCount", NC_INT, len, eCount)))
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                    ^˜˜
netCDF.c:196:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t start[] = {sample, colStart, 0};
                     ˜^˜˜˜˜˜
netCDF.c:196:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t start[] = {sample, colStart, 0};
                     ˜        ^˜˜˜˜˜˜˜
netCDF.c:197:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count[] = {1, colEnd +1 - colStart, nRow};
                     ˜   ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
netCDF.c:197:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count[] = {1, colEnd +1 - colStart, nRow};
                     ˜                         ^˜˜˜
netCDF.c:168:61: warning: unused variable 'failcount' [-Wunused-variable]
    int retval, ncid, varid, colStart, colEnd, nRow, sample,failcount=0;
                                                            ^
netCDF.c:166:11: warning: unused variable 'estack' [-Wunused-variable]
    hid_t estack;
          ^
netCDF.c:253:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t start =INTEGER(_start)[0]-1 ;
           ˜˜˜˜˜  ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
netCDF.c:254:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count = INTEGER(_count)[0];
           ˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:267:18: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    int metaSize=count;
        ˜˜˜˜˜˜˜˜ ^˜˜˜˜
netCDF.c:316:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    count=metaSize;
         ˜^˜˜˜˜˜˜˜
netCDF.c:340:21: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
    int sizeInBytes=ceil((float)eventCount/8);
        ˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:343:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t chunksize[] = {1,sizeInBytes};
                         ˜  ^˜˜˜˜˜˜˜˜˜˜
netCDF.c:348:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if ((retval = nc_def_dim(ncid, "indice", sizeInBytes, &x_dimid)))
                  ˜˜˜˜˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜˜
netCDF.c:350:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if ((retval = nc_def_dim(ncid, "Node", totalNodeCount, &y_dimid)))
                  ˜˜˜˜˜˜˜˜˜˜               ^˜˜˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:387:64: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if((retval = nc_put_att_int(ncid, varid, "nbitset", NC_INT,totalNodeCount, nbitset)))
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:412:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t start[] = {nodeIndStart, 0};
                     ˜^˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:413:23: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count[] = {nNodes,nLength};
                     ˜^˜˜˜˜˜
netCDF.c:413:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size_t count[] = {nNodes,nLength};
                     ˜       ^˜˜˜˜˜˜
netCDF.c:463:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if((retval = nc_put_att_int(ncid, varid, "nbitset", NC_INT, totalNodeCount, nbitset)))
                 ˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:499:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    const size_t start[] = {nodeIndStart, 0};
                           ˜^˜˜˜˜˜˜˜˜˜˜˜
netCDF.c:500:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    const size_t count[] = {nNode,sizeInBytes};
                           ˜^˜˜˜˜
netCDF.c:500:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    const size_t count[] = {nNode,sizeInBytes};
                           ˜      ^˜˜˜˜˜˜˜˜˜˜
33 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/liblib/stub.c -o trimmed_netcdf-4.2.1.1/liblib/stub.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/datt.c -o trimmed_netcdf-4.2.1.1/libdispatch/datt.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dattget.c -o trimmed_netcdf-4.2.1.1/libdispatch/dattget.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dattinq.c -o trimmed_netcdf-4.2.1.1/libdispatch/dattinq.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dattput.c -o trimmed_netcdf-4.2.1.1/libdispatch/dattput.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dcompound.c -o trimmed_netcdf-4.2.1.1/libdispatch/dcompound.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c -o trimmed_netcdf-4.2.1.1/libdispatch/dcopy.o
trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c:154:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(ids = (int *)malloc(nids * sizeof(int))))
                                ^˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c:179:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(ids = (int *)malloc(nids * sizeof(int))))
                                ^˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c:311:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   if (!(start = malloc(real_ndims * sizeof(size_t))))
                        ^˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c:313:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   if (!(count = malloc(real_ndims * sizeof(size_t))))
                        ^˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c:321:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   if (!(dimlen = malloc(real_ndims * sizeof(size_t))))
                         ^˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dcopy.c:468:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(data = malloc(len * NC_atomictypelen(xtype))))
                                 ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/ddim.c -o trimmed_netcdf-4.2.1.1/libdispatch/ddim.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/ddispatch.c -o trimmed_netcdf-4.2.1.1/libdispatch/ddispatch.o
trimmed_netcdf-4.2.1.1/libdispatch/ddispatch.c:33:20: warning: unused variable 'servers' [-Wunused-variable]
static const char* servers[] = {
                   ^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/denum.c -o trimmed_netcdf-4.2.1.1/libdispatch/denum.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/derror.c -o trimmed_netcdf-4.2.1.1/libdispatch/derror.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dfile.c -o trimmed_netcdf-4.2.1.1/libdispatch/dfile.o
trimmed_netcdf-4.2.1.1/libdispatch/dfile.c:125:11: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      i = fread(magic, MAGIC_NUMBER_LEN, 1, fp);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dfile.c:1361:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if(size) *size = NC_atomictypelen(xtype);
                     ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dfile.c:1639:21: warning: implicit conversion loses integer precision: 'rlim_t' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
                maxfd = rl.rlim_max;
                      ˜ ˜˜˜^˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dfile.c:1641:21: warning: implicit conversion loses integer precision: 'rlim_t' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
                maxfd = rl.rlim_cur;
                      ˜ ˜˜˜^˜˜˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dgroup.c -o trimmed_netcdf-4.2.1.1/libdispatch/dgroup.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dnclog.c -o trimmed_netcdf-4.2.1.1/libdispatch/dnclog.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dopaque.c -o trimmed_netcdf-4.2.1.1/libdispatch/dopaque.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dparallel.c -o trimmed_netcdf-4.2.1.1/libdispatch/dparallel.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dstring.c -o trimmed_netcdf-4.2.1.1/libdispatch/dstring.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dsubstrate.c -o trimmed_netcdf-4.2.1.1/libdispatch/dsubstrate.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dtype.c -o trimmed_netcdf-4.2.1.1/libdispatch/dtype.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c -o trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.o
trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c:167:14: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'uint8_t' (aka 'unsigned char') [-Wconversion]
    dst[0] = uc;
           ˜ ^˜
trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c:170:19: warning: implicit conversion loses integer precision: 'int' to 'uint8_t' (aka 'unsigned char') [-Wconversion]
    dst[0] = 0xC0 + (uc >> 6);
           ˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c:180:19: warning: implicit conversion loses integer precision: 'int' to 'uint8_t' (aka 'unsigned char') [-Wconversion]
    dst[0] = 0xE0 + (uc >> 12);
           ˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c:185:19: warning: implicit conversion loses integer precision: 'int' to 'uint8_t' (aka 'unsigned char') [-Wconversion]
    dst[0] = 0xF0 + (uc >> 18);
           ˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c:536:19: warning: implicit conversion changes signedness: 'ssize_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
  buffer = malloc(result * sizeof(int32_t) + 1);
                  ^˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.c:550:36: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    newptr = realloc(buffer, result+1);
             ˜˜˜˜˜˜˜         ˜˜˜˜˜˜^˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dv2i.c -o trimmed_netcdf-4.2.1.1/libdispatch/dv2i.o
trimmed_netcdf-4.2.1.1/libdispatch/dv2i.c:160:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    size = nctypelen(type);
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dv2i.c:240:15: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        *nrecvarsp = nrvars;
                   ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dv2i.c:947:61: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        const int status = nc_put_att(ncid, varid, name, datatype, len, value);
                           ˜˜˜˜˜˜˜˜˜˜                              ^˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dvar.c -o trimmed_netcdf-4.2.1.1/libdispatch/dvar.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c -o trimmed_netcdf-4.2.1.1/libdispatch/dvarget.o
trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c:134:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   memtypelen = nctypelen(memtype);
              ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c:195:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      mystart = (size_t *)calloc(varndims * 7, sizeof(ptrdiff_t));
                          ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c:254:18: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         length[idim] = mymap[idim] * myedges[idim];
                        ^˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c:255:48: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         stop[idim] = mystart[idim] + myedges[idim] * mystride[idim];
                                                    ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c:317:13: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         value += (mymap[idim] * memtypelen);
                   ^˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarget.c:318:20: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         mystart[idim] += mystride[idim];
                       ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dvarinq.c -o trimmed_netcdf-4.2.1.1/libdispatch/dvarinq.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c -o trimmed_netcdf-4.2.1.1/libdispatch/dvarput.o
trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c:137:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   memtypelen = nctypelen(memtype);
              ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c:198:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      mystart = (size_t *)calloc(varndims * 7, sizeof(ptrdiff_t));
                          ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c:237:18: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         length[idim] = mymap[idim] * myedges[idim];
                        ^˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c:238:48: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         stop[idim] = mystart[idim] + myedges[idim] * mystride[idim];
                                                    ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c:294:13: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         value += (mymap[idim] * memtypelen);
                   ^˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libdispatch/dvarput.c:295:20: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         mystart[idim] += mystride[idim];
                       ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/dvlen.c -o trimmed_netcdf-4.2.1.1/libdispatch/dvlen.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.c -o trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.o
trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.c:70:48: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
        while((c=*p1++)) {if(c != '\\') *p++ = c;}
                                             ˜ ^
trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.c:80:56: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
    while((c=*p1++)) {if(c != ' ' && c != '\t') *p++ = c;}
                                                     ˜ ^
trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.c:241:31: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        size_t plen = (select - proj);
               ˜˜˜˜    ˜˜˜˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.c:378:10: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
        *cq++ = c;
              ˜ ^
trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.c:392:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    plist = (char**)calloc(1,sizeof(char*)*(2*nparams+1)); /* +1 for null termination */
                                          ˜ ˜˜˜˜˜˜˜˜˜^˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c -o trimmed_netcdf-4.2.1.1/libdispatch/ncaux.o
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:120:69: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        newfields = (struct NCAUX_FIELD*)realloc(cmpd->fields,cmpd->nfields+1*sizeof(struct NCAUX_FIELD));
                                                              ˜˜˜˜˜˜^˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:129:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(field->dimsizes,dimsizes,sizeof(int)*ndims);
                                               ˜^˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:129:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(field->dimsizes,dimsizes,sizeof(int)*ndims);
                                               ˜^˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:141:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    for(i=0;i<ndims;i++) product *= dimsizes[i];
                                 ˜˜ ^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:316:19: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    return align->alignment;
    ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:381:19: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        offset += getpadding(offset,alignment);
               ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncaux.c:381:30: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
        offset += getpadding(offset,alignment);
                  ˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
7 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c -o trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.o
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:48:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL) return ncbytesfail();
                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:51:32: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb->nonextendible) return ncbytesfail();
                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:73:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL) return ncbytesfail();
                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:74:58: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(sz > bb->alloc) {if(!ncbytessetalloc(bb,sz)) return ncbytesfail();}
                                                  ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:83:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL) return ncbytesfail();
                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:99:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL) return ncbytesfail();
                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:100:34: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(index >= bb->length) return ncbytesfail();
                          ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:108:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL) return ncbytesfail();
                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:109:65: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb->length >= bb->alloc) if(!ncbytessetalloc(bb,0)) return ncbytesfail();
                                                         ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:119:41: warning: implicit conversion loses integer precision: 'unsigned long' to 'unsigned int' [-Wshorten-64-to-32]
    ncbytesappendn(bb,(void*)s,strlen(s)+1); /* include trailing null*/
    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜             ˜˜˜˜˜˜˜˜˜^˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:121:32: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
    if(bb->length == 0) return ncbytesfail();
                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:129:41: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL || elem == NULL) return ncbytesfail();
                                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:130:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
  if(n == 0) {n = strlen((char*)elem);}
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:131:65: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  while(!ncbytesavail(bb,n)) {if(!ncbytessetalloc(bb,0)) return ncbytesfail();}
                                                         ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:144:13: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  for(i=bb->alloc;i>=1;i--) {bb->content[i]=bb->content[i-1];}
       ˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:141:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb == NULL) return ncbytesfail();
                 ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:142:65: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  if(bb->length >= bb->alloc) if(!ncbytessetalloc(bb,0)) return ncbytesfail();
                                                         ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.c:172:27: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
    if(bb == NULL) return ncbytesfail();
                   ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
18 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c -o trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.o
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:31:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  hm->table = (NClist**)malloc(hm->alloc*sizeof(NClist*));
                               ˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:33:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset((void*)hm->table,0,hm->alloc*sizeof(NClist*));
                            ˜˜˜˜^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:33:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset((void*)hm->table,0,hm->alloc*sizeof(NClist*));
                            ˜˜˜˜^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:60:20: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
           ˜  ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:60:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
                   ˜ ˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:63:11: warning: operand of ? changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    len = nclistlength(seq);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/include/nclist.h:63:36: note: expanded from macro 'nclistlength'
#define nclistlength(l)  ((l)?(l)->length:0U)
                              ˜˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:83:20: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
           ˜  ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:83:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
                   ˜ ˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:86:11: warning: operand of ? changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    len = nclistlength(seq);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/include/nclist.h:63:36: note: expanded from macro 'nclistlength'
#define nclistlength(l)  ((l)?(l)->length:0U)
                              ˜˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:106:20: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
           ˜  ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:106:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
                   ˜ ˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:109:11: warning: operand of ? changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    len = nclistlength(seq);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/include/nclist.h:63:36: note: expanded from macro 'nclistlength'
#define nclistlength(l)  ((l)?(l)->length:0U)
                              ˜˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:113:24: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
            nclistremove(seq,i+1);
            ˜˜˜˜˜˜˜˜˜˜˜˜     ˜^˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:114:23: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
            nclistremove(seq,i);
            ˜˜˜˜˜˜˜˜˜˜˜˜     ^
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:140:20: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
           ˜  ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:140:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    offset = (hash % hm->alloc);    
                   ˜ ˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:143:11: warning: operand of ? changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    len = nclistlength(seq);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/include/nclist.h:63:36: note: expanded from macro 'nclistlength'
#define nclistlength(l)  ((l)?(l)->length:0U)
                              ˜˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:163:54: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
            if(hashp) *hashp = (nchashid)nclistget(seq,index*2);
                                         ˜˜˜˜˜˜˜˜˜     ˜˜˜˜˜^˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:164:48: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
            if(elemp) *elemp = nclistget(seq,(index*2)+1);
                               ˜˜˜˜˜˜˜˜˜     ˜˜˜˜˜˜˜˜˜^˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:183:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        keys = (nchashid*)malloc(sizeof(nchashid)*hm->size);
                                                 ˜˜˜˜˜^˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.c:187:50: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                keys[index++] = (nchashid)nclistget(seq,j);
                                          ˜˜˜˜˜˜˜˜˜     ^
21 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/nclist.c -o trimmed_netcdf-4.2.1.1/libdispatch/nclist.o
trimmed_netcdf-4.2.1.1/libdispatch/nclist.c:175:48: warning: implicit conversion loses integer precision: 'ncelem' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  if(l == NULL || (len=l->length) == 0) return ncDATANULL;
                                        ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libdispatch/nctime.c -o trimmed_netcdf-4.2.1.1/libdispatch/nctime.o
trimmed_netcdf-4.2.1.1/libdispatch/nctime.c:122:15: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
                date->day       = idoy;
                                ˜ ^˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nctime.c:193:34: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
        doy     = (long) floor(etime / 24.) + 1;
                ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nctime.c:283:46: warning: implicit conversion loses integer precision: 'long' to 'short' [-Wconversion]
                ehtime.month = delMonths - (12 * delYears) + 1;
                             ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nctime.c:535:37: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
                *nDel = (frange + 1.e-10*delHours)/delHours;
                      ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nctime.c:516:15: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
                *nDel = abs(range)/delMonths;
                        ˜˜˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libdispatch/nctime.c:1092:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
        isec = sec;
             ˜ ^˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/attr.c -o trimmed_netcdf-4.2.1.1/libsrc/attr.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/dim.c -o trimmed_netcdf-4.2.1.1/libsrc/dim.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/lookup3.c -o trimmed_netcdf-4.2.1.1/libsrc/lookup3.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/memio.c -o trimmed_netcdf-4.2.1.1/libsrc/memio.o
trimmed_netcdf-4.2.1.1/libsrc/memio.c:206:39: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'off_t' (aka 'long long') [-Wsign-conversion]
    status = memio_new(path, ioflags, initialsz, &nciop, &memio);
             ˜˜˜˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:212:39: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memio->memory = (char*)malloc(memio->alloc);
                               ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:232:39: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        memio->memory = (char*)malloc(memio->alloc);
                               ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:256:32: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    if(sizehintp) *sizehintp = pagesize;
                             ˜ ^˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:334:42: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memio->memory = (char*)malloc(memio->alloc);
                           ˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:348:36: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
            ssize_t count = read(fd, pos, red);
                            ˜˜˜˜          ^˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:360:24: warning: implicit conversion changes signedness: 'long long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    sizehint = filesize/2;
             ˜ ˜˜˜˜˜˜˜˜^˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:323:8: warning: variable 'nciop' is used uninitialized whenever 'if' condition is true [-Wsometimes-uninitialized]
    if(filesize < 0) {status = errno; goto unwind_open;}
       ^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:380:17: note: uninitialized use occurs here
    memio_close(nciop,0);
                ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:323:5: note: remove the 'if' if its condition is always false
    if(filesize < 0) {status = errno; goto unwind_open;}
    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:319:8: warning: variable 'nciop' is used uninitialized whenever 'if' condition is true [-Wsometimes-uninitialized]
    if(fd < 0) {status = errno; goto unwind_open;}
       ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:380:17: note: uninitialized use occurs here
    memio_close(nciop,0);
                ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:319:5: note: remove the 'if' if its condition is always false
    if(fd < 0) {status = errno; goto unwind_open;}
    ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:287:16: note: initialize the variable 'nciop' to silence this warning
    ncio* nciop;
               ^
                = NULL
trimmed_netcdf-4.2.1.1/libsrc/memio.c:426:47: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        newmem = (char*)realloc(memio->memory,newsize);
                        ˜˜˜˜˜˜˜               ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:430:30: warning: arithmetic on a pointer to void is a GNU extension [-Wpointer-arith]
        memset((void*)(newmem+memio->alloc),0,(newsize - memio->alloc));
                       ˜˜˜˜˜˜^
/usr/include/secure/_string.h:73:21: note: expanded from macro 'memset'
  ((__darwin_obsz0 (dest) != (size_t) -1)                               \
                    ^
/usr/include/secure/_common.h:38:55: note: expanded from macro '__darwin_obsz0'
#define __darwin_obsz0(object) __builtin_object_size (object, 0)
                                                      ^
trimmed_netcdf-4.2.1.1/libsrc/memio.c:430:30: warning: arithmetic on a pointer to void is a GNU extension [-Wpointer-arith]
        memset((void*)(newmem+memio->alloc),0,(newsize - memio->alloc));
                       ˜˜˜˜˜˜^
/usr/include/secure/_string.h:74:30: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                             ^
trimmed_netcdf-4.2.1.1/libsrc/memio.c:430:30: warning: arithmetic on a pointer to void is a GNU extension [-Wpointer-arith]
        memset((void*)(newmem+memio->alloc),0,(newsize - memio->alloc));
                       ˜˜˜˜˜˜^
/usr/include/secure/_string.h:74:62: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                                             ^
/usr/include/secure/_common.h:38:55: note: expanded from macro '__darwin_obsz0'
#define __darwin_obsz0(object) __builtin_object_size (object, 0)
                                                      ^
trimmed_netcdf-4.2.1.1/libsrc/memio.c:430:30: warning: arithmetic on a pointer to void is a GNU extension [-Wpointer-arith]
        memset((void*)(newmem+memio->alloc),0,(newsize - memio->alloc));
                       ˜˜˜˜˜˜^
/usr/include/secure/_string.h:75:27: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                          ^
trimmed_netcdf-4.2.1.1/libsrc/memio.c:477:41: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                ssize_t count = write(fd, pos, written);
                                ˜˜˜˜˜          ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:525:37: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
    status = guarantee(nciop, offset+extent);
             ˜˜˜˜˜˜˜˜˜        ˜˜˜˜˜˜^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:525:31: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
    status = guarantee(nciop, offset+extent);
                              ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:545:35: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
       status = guarantee(nciop,to+nbytes);
                ˜˜˜˜˜˜˜˜˜       ˜˜^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:545:33: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
       status = guarantee(nciop,to+nbytes);
                                ^˜˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:549:9: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
    if((to + nbytes) > from || (from + nbytes) > to) {
        ^˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/memio.c:549:33: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
    if((to + nbytes) > from || (from + nbytes) > to) {
                                ^˜˜˜ ˜
21 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/nc.c -o trimmed_netcdf-4.2.1.1/libsrc/nc.o
trimmed_netcdf-4.2.1.1/libsrc/nc.c:174:28: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        ncp->xsz = ncx_len_NC(ncp,sizeof_off_t);
                   ˜˜˜˜˜˜˜˜˜˜     ^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:186:24: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
          if(ncp->begin_var < index + h_minfree)
                              ^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:216:23: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
        if (ncp->begin_rec < index + v_minfree ||
                             ^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:220:24: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
          if(ncp->begin_rec < index + v_minfree)
                              ^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:265:18: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                ncp->recsize = *last->dsizes * last->xsz;
                               ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:267:19: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                ncp->recsize += *last->dsizes * last->xsz;
                                ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:475:63: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                            const int status = fill_NC_var(gnu, gnu_varp, varsize, recno);
                                               ˜˜˜˜˜˜˜˜˜˜˜                         ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:546:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                gnu_off = gnu_varp->begin + (off_t)(gnu->recsize * recno);
                                                                 ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:547:54: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
                old_off = old_varp->begin + (off_t)(old->recsize * recno);
                                                                 ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:823:24: warning: implicit conversion changes signedness: 'const size_t' (aka 'const unsigned long') to 'off_t' (aka 'long long') [-Wsign-conversion]
            *calcsizep = ncp->xsz; /* size of header */
                       ˜ ˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:838:26: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'off_t' (aka 'long long') [-Wsign-conversion]
            varsize = last_fix->len;
                    ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:849:34: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
            *calcsizep = ncp->begin_rec + ncp->numrecs * ncp->recsize;
                       ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:849:24: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
            *calcsizep = ncp->begin_rec + ncp->numrecs * ncp->recsize;
                         ˜˜˜˜˜^˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/nc.c:1498:15: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      *size = atomic_size[typeid - 1];
            ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
14 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/nc3dispatch.c -o trimmed_netcdf-4.2.1.1/libsrc/nc3dispatch.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/ncio.c -o trimmed_netcdf-4.2.1.1/libsrc/ncio.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/nclistmgr.c -o trimmed_netcdf-4.2.1.1/libsrc/nclistmgr.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/ncx.c -o trimmed_netcdf-4.2.1.1/libsrc/ncx.o
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:44:9: warning: 'LONG_LONG_MAX' macro redefined
#define LONG_LONG_MAX LLONG_MAX
        ^
/usr/bin/../lib/clang/3.2/include/limits.h:112:9: note: previous definition is here
#define LONG_LONG_MAX  __LONG_LONG_MAX__
        ^
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:45:9: warning: 'LONG_LONG_MIN' macro redefined
#define LONG_LONG_MIN LLONG_MIN
        ^
/usr/bin/../lib/clang/3.2/include/limits.h:113:9: note: previous definition is here
#define LONG_LONG_MIN  (-__LONG_LONG_MAX__-1LL)
        ^
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:46:9: warning: 'ULONG_LONG_MAX' macro redefined
#define ULONG_LONG_MAX ULLONG_MAX
        ^
/usr/bin/../lib/clang/3.2/include/limits.h:114:9: note: previous definition is here
#define ULONG_LONG_MAX (__LONG_LONG_MAX__*2ULL+1ULL)
        ^
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:356:14: warning: implicit conversion loses integer precision: 'int' to 'ix_short' (aka 'short') [-Wconversion]
        *ip = *cp++ << 8;
            ˜ ˜˜˜˜˜˜^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:371:16: warning: implicit conversion changes signedness: 'int' to 'uchar' (aka 'unsigned char') [-Wsign-conversion]
        *cp++ = (*ip) >> 8;
              ˜ ˜˜˜˜˜˜^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:381:8: warning: implicit conversion loses integer precision: 'ix_short' (aka 'short') to 'schar' (aka 'signed char') [-Wconversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:392:8: warning: implicit conversion loses integer precision: 'ix_short' (aka 'short') to 'uchar' (aka 'unsigned char') [-Wconversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:443:8: warning: implicit conversion changes signedness: 'ix_short' (aka 'short') to 'unsigned int' [-Wsign-conversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:477:8: warning: implicit conversion changes signedness: 'ix_short' (aka 'short') to 'unsigned long long' [-Wsign-conversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:616:16: warning: implicit conversion turns floating-point number into integer: 'const float' to 'ix_short' (aka 'short') [-Wconversion]
        ix_short xx = *ip;
                 ˜˜   ^˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:626:16: warning: implicit conversion turns floating-point number into integer: 'const double' to 'ix_short' (aka 'short') [-Wconversion]
        ix_short xx = *ip;
                 ˜˜   ^˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:675:16: warning: implicit conversion changes signedness: 'ix_int' (aka 'int') to 'uchar' (aka 'unsigned char') [-Wsign-conversion]
        *cp++ = (*ip) >> 24;
              ˜ ˜˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:687:8: warning: implicit conversion loses integer precision: 'ix_int' (aka 'int') to 'schar' (aka 'signed char') [-Wconversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:698:8: warning: implicit conversion loses integer precision: 'ix_int' (aka 'int') to 'uchar' (aka 'unsigned char') [-Wconversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:713:8: warning: implicit conversion loses integer precision: 'ix_int' (aka 'int') to 'short' [-Wconversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:745:8: warning: implicit conversion changes signedness: 'ix_int' (aka 'int') to 'unsigned int' [-Wsign-conversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:765:8: warning: implicit conversion changes signedness: 'ix_int' (aka 'int') to 'unsigned long long' [-Wsign-conversion]
        *ip = xx;
            ˜ ^˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:1445:8: warning: implicit conversion changes signedness: 'long long' to 'unsigned long long' [-Wsign-conversion]
        *ip = (longlong) xx;
            ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2065:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        *ulp |= (*cp++ << 16);
             ˜˜  ˜˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2066:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        *ulp |= (*cp++ << 8);
             ˜˜  ˜˜˜˜˜˜^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2107:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp++ = (uchar)(((*lp) & 0x00ff000000000000ULL) >> 48);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2108:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp++ = (uchar)(((*lp) & 0x0000ff0000000000ULL) >> 40);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2109:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp++ = (uchar)(((*lp) & 0x000000ff00000000ULL) >> 32);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2110:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp++ = (uchar)(((*lp) & 0x00000000ff000000ULL) >> 24);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2111:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp++ = (uchar)(((*lp) & 0x0000000000ff0000ULL) >> 16);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2112:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp++ = (uchar)(((*lp) & 0x000000000000ff00ULL) >>  8);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2113:21: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
                *cp   = (uchar)( (*lp) & 0x00000000000000ffULL);
                                  ^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2265:11: warning: implicit conversion changes signedness: 'schar' (aka 'signed char') to 'uint' (aka 'unsigned int') [-Wsign-conversion]
                *tp++ = *xp++;
                      ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2293:11: warning: implicit conversion changes signedness: 'schar' (aka 'signed char') to 'ulonglong' (aka 'unsigned long long') [-Wsign-conversion]
                *tp++ = *xp++;
                      ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2412:11: warning: implicit conversion changes signedness: 'schar' (aka 'signed char') to 'uint' (aka 'unsigned int') [-Wsign-conversion]
                *tp++ = *xp++;
                      ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/ncx.c:2448:11: warning: implicit conversion changes signedness: 'schar' (aka 'signed char') to 'ulonglong' (aka 'unsigned long long') [-Wsign-conversion]
                *tp++ = *xp++;
                      ˜ ^˜˜˜˜
31 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/posixio.c -o trimmed_netcdf-4.2.1.1/libsrc/posixio.o
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:167:23: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
            if (lseek(fd, len-sizeof(dumb), SEEK_SET) < 0)
                ˜˜˜˜˜     ˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:167:20: warning: implicit conversion changes signedness: 'const off_t' (aka 'const long long') to 'unsigned long long' [-Wsign-conversion]
            if (lseek(fd, len-sizeof(dumb), SEEK_SET) < 0)
                          ^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:255:17: warning: implicit conversion changes signedness: 'ssize_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
            nextent -= partial;
                    ˜˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:308:12: warning: implicit conversion changes signedness: 'ssize_t' (aka 'long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        *nreadp = nread;
                ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:447:15: warning: implicit conversion changes signedness: 'size_t' (aka 'unsigned long') to 'off_t' (aka 'long long') [-Wsign-conversion]
        off_t diff = (size_t)(offset - blkoffset);
              ˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:448:20: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
        off_t blkextent = _RNDUP(diff + extent, pxp->blksz);
              ˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/include/rnd.h:10:2: note: expanded from macro '_RNDUP'
        * (unit))
        ^˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:448:27: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
        off_t blkextent = _RNDUP(diff + extent, pxp->blksz);
                                 ^˜˜˜ ˜
trimmed_netcdf-4.2.1.1/include/rnd.h:9:30: note: expanded from macro '_RNDUP'
#define _RNDUP(x, unit)  ((((x) + (unit) - 1) / (unit)) \
                             ^
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:639:4: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                 blkextent,
                 ^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:646:20: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         pxp->bf_extent = blkextent;
                        ˜ ^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:649:12: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
        extent += diff;
               ˜˜ ^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:827:20: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
                off_t frm = from + nbytes;
                      ˜˜˜   ˜˜˜˜˜^˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:827:15: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                off_t frm = from + nbytes;
                            ^˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:828:18: warning: implicit conversion changes signedness: 'unsigned long long' to 'off_t' (aka 'long long') [-Wsign-conversion]
                off_t toh = to + nbytes;
                      ˜˜˜   ˜˜˜^˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/posixio.c:828:15: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                off_t toh = to + nbytes;
                            ^˜ ˜
14 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/putget.c -o trimmed_netcdf-4.2.1.1/libsrc/putget.o
trimmed_netcdf-4.2.1.1/libsrc/putget.c:331:13: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                offset += (off_t)ncp->recsize * recno;
                          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:736:14: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                        lcoord += (off_t)(*coord) * ncp->recsize;
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:5148:6: warning: expression result unused; should this cast be to 'void'? [-Wunused-value]
            (void*)memcpy((void*)modedges,(void*)varp->shape,
            ^    ˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:5165:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memtypelen = nctypelen(memtype);
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:5199:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    const size_t index = ii;
                 ˜˜˜˜˜   ^˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:5272:18: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    memtypelen = nctypelen(memtype);
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:5279:6: warning: expression result unused; should this cast be to 'void'? [-Wunused-value]
            (void*)memcpy((void*)modedges,(void*)varp->shape,
            ^    ˜
trimmed_netcdf-4.2.1.1/libsrc/putget.c:5329:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    const size_t index = ii;
                 ˜˜˜˜˜   ^˜
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/v1hpg.c -o trimmed_netcdf-4.2.1.1/libsrc/v1hpg.o
trimmed_netcdf-4.2.1.1/libsrc/v1hpg.c:1121:24: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                            ncp->recsize += (*vpp)->dsizes[0];
                                         ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc/v1hpg.c:1145:19: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                        ncp->recsize = *first_rec->dsizes * first_rec->xsz;
                                       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/v1hpg.c:1316:21: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
                                extent = filesize;
                                       ˜ ^˜˜˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc/var.c -o trimmed_netcdf-4.2.1.1/libsrc/var.o
trimmed_netcdf-4.2.1.1/libsrc/var.c:450:22: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
                varp->len = product * varp->xsz;
                            ^˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc/var.c:574:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        varp = new_NC_var(name, type, ndims, dimids);
               ˜˜˜˜˜˜˜˜˜˜             ^˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/error4.c -o trimmed_netcdf-4.2.1.1/libsrc4/error4.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:83:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      *lenp = att->len;
            ˜ ˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:106:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(bufr = malloc((size_t)(att->len * type_size))))
                                   ˜˜˜˜˜^˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:167:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(data, bufr, (size_t)(att->len * type_size));
                                        ˜˜˜˜˜^˜˜ ˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:167:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            memcpy(data, bufr, (size_t)(att->len * type_size));
                                        ˜˜˜˜˜^˜˜ ˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:258:10: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          len * nc4typelen(file_type) > (size_t)att->len * nc4typelen(att->xtype))
              ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:258:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          len * nc4typelen(file_type) > (size_t)att->len * nc4typelen(att->xtype))
                                                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:360:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (!(var->fill_value = malloc(size)))
                              ˜˜˜˜˜˜ ^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:369:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(fv_vlen->p = malloc(size * in_vlen->len)))
                                   ^˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:371:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(fv_vlen->p, in_vlen->p, in_vlen->len * size);
                                                     ˜ ^˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:371:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         memcpy(fv_vlen->p, in_vlen->p, in_vlen->len * size);
                                                     ˜ ^˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:396:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(att->vldata = malloc(att->len * sizeof(hvl_t))))
                                 ˜˜˜˜˜^˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:409:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(att->stdata = malloc(sizeof(char *) * att->len)))
                                                ˜ ˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:426:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(att->data = malloc(att->len * type_size)))
                                  ˜˜˜˜˜^˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:308:15: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   att->len = len;
            ˜ ^˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.c:357:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
         size = type_size;
              ˜ ^˜˜˜˜˜˜˜˜
15 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4dim.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4dim.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4dispatch.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4dispatch.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4file.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:111:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   nc4_chunk_cache_size = size;
                        ˜ ^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:112:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   nc4_chunk_cache_nelems = nelems;
                          ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:280:39: warning: implicit conversion changes signedness: 'int' to 'hbool_t' (aka 'unsigned int') [-Wsign-conversion]
         if (H5Pset_fapl_core(fapl_id, 4096, persist))
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:489:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   if (!(grp->dim->name = malloc((max_len + 1) * sizeof(char))))
                                  ˜˜˜˜˜˜˜˜^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:488:61: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   max_len = strlen(obj_name) > NC_MAX_NAME ? NC_MAX_NAME : strlen(obj_name);
           ˜                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:813:28: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      (*type_info)->size = type_size[t];
                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:781:16: warning: variable 't' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
      else if (class == H5T_INTEGER || class == H5T_FLOAT)
               ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:811:33: note: uninitialized use occurs here
      *xtype = nc_type_constant[t];
                                ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:781:12: note: remove the 'if' if its condition is always true
      else if (class == H5T_INTEGER || class == H5T_FLOAT)
           ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:724:9: note: initialize the variable 't' to silence this warning
   int t;
        ^
         = 0
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:902:18: warning: implicit conversion changes signedness: 'hssize_t' (aka 'long long') to 'hsize_t' (aka 'unsigned long long') [-Wsign-conversion]
       dims[0] = att_npoints;
               ˜ ^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:917:13: warning: implicit conversion changes signedness: 'hssize_t' (aka 'long long') to 'hsize_t' (aka 'unsigned long long') [-Wsign-conversion]
         dims[0] = att_npoints;
                 ˜ ^˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:943:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(att->vldata = malloc((unsigned int)(att->len * sizeof(hvl_t)))))
                                                   ˜˜˜˜˜^˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:950:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         if (!(att->stdata = calloc(att->len, sizeof(char *))))
                             ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:969:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            if (!(contig_buf = malloc(att->len * fixed_size * sizeof(char))))
                                      ˜˜˜˜˜^˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1000:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(att->data = malloc((unsigned int)(att->len * type_size))))
                                                 ˜˜˜˜˜^˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:932:15: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
   att->len = dims[0];
            ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1249:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
         if (!(member_name = H5Tget_member_name(hdf_typeid, i)))
                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜             ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1253:46: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
         if (H5Tget_member_value(hdf_typeid, i, value) < 0) 
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜             ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1193:30: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
               dim_size[d] = dims[d];
                           ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1317:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (!(var->dim = calloc(var->ndims, sizeof(NC_DIM_INFO_T *))))
                       ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1319:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (!(var->dimids = calloc(var->ndims, sizeof(int))))
                          ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1327:34: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
   var->chunk_cache_preemption = rdcc_w0;
                               ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1362:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(var->chunksizes = malloc(var->ndims * sizeof(size_t))))
                                     ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1376:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      if ((filter = H5Pget_filter2(propid, f, NULL, &cd_nelems, 
                    ˜˜˜˜˜˜˜˜˜˜˜˜˜˜         ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1392:34: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
            var->deflate_level = cd_values[0];
                               ˜ ^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1398:26: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
            var->options_mask = cd_values[0];
                              ˜ ^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1399:37: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
            var->pixels_per_block = cd_values[1];
                                  ˜ ^˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1482:53: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
         if (H5DSiterate_scales(var->hdf_datasetid, d, NULL, dimscale_visitor,
             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                     ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1311:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   var->ndims = ndims;
              ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1580:14: warning: implicit conversion changes signedness: 'int' to 'hsize_t' (aka 'unsigned long long') [-Wsign-conversion]
   num_obj = H5Aget_num_attrs(grp->hdf_grpid);
           ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1607:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(att->name = malloc((max_len + 1) * sizeof(char))))
                                   ˜˜˜˜˜˜˜˜^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1606:60: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
         max_len = strlen(obj_name) > NC_MAX_NAME ? NC_MAX_NAME : strlen(obj_name);
                 ˜                                                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:1690:56: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if ((retval = read_var(grp, datasetid, obj_name, ndims,
                    ˜˜˜˜˜˜˜˜                           ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:2880:8: warning: variable 'retval' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
   if (!(h5->cmode & NC_NOWRITE))
       ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:2894:11: note: uninitialized use occurs here
   return retval;
          ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:2880:4: note: remove the 'if' if its condition is always true
   if (!(h5->cmode & NC_NOWRITE))
   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:2854:14: note: initialize the variable 'retval' to silence this warning
   int retval;
             ^
              = 0
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:2971:10: warning: implicit conversion loses integer precision: 'ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
        nobjs = H5Fget_obj_count(h5->hdfid, H5F_OBJ_ALL);
              ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4file.c:3145:11: warning: unused variable 'found' [-Wunused-variable]
      int found = 0;
          ^
34 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4grp.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4grp.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4grp.c:185:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   if (!(name = malloc((g + 1) * (NC_MAX_NAME + 1) + 1)))
                ˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4grp.c:187:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   if (!(gid = malloc((g + 1) * sizeof(int))))
                       ˜˜^˜˜  ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4grp.c:430:17: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         qsort(dimids, num, sizeof(int), int_cmp);
         ˜˜˜˜˜         ^˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:65:69: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
               if (H5DSattach_scale(var->hdf_datasetid, dimscaleid, d) < 0)
                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                 ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:115:58: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                  if (H5DSdetach_scale(var->hdf_datasetid, dimscaleid, d) < 0)
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                 ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:717:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(xtend_size = malloc(var->ndims * sizeof(hsize_t))))
                                ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:948:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long long' [-Wsign-conversion]
                  count[d2] -= fill_value_size[d2];
                            ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1008:64: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
          if ((fstring_len = H5Tget_size(var->type_info->hdf_typeid)) < 0)
              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1128:45: warning: operand of ? changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         fill_len *= (fill_value_size[d2] ? fill_value_size[d2] : 1);
                  ˜˜                        ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:837:10: warning: unused variable 'hdf_datasetid' [-Wunused-variable]
   hid_t hdf_datasetid;
         ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:943:44: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
                     fill_value_size[d2] = count[d2];
                                         ˜ ^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:945:54: warning: implicit conversion loses integer precision: 'unsigned long long' to 'int' [-Wshorten-64-to-32]
                     fill_value_size[d2] = count[d2] - (fdims[d2] - start[d2]);
                                         ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:953:41: warning: implicit conversion loses integer precision: 'hsize_t' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
                  fill_value_size[d2] = count[d2];
                                      ˜ ^˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1219:25: warning: implicit conversion changes signedness: 'int' to 'hsize_t' (aka 'unsigned long long') [-Wsign-conversion]
   coords_len[0] = var->ndims;
                 ˜ ˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1362:40: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
      if (H5Pset_deflate(plistid, var->deflate_level) < 0)
          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜          ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1397:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(dimsize = malloc(var->ndims * sizeof(hsize_t))))
                             ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1399:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(maxdimsize = malloc(var->ndims * sizeof(hsize_t))))
                                ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1401:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(chunksize = malloc(var->ndims * sizeof(hsize_t))))
                               ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1429:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'hsize_t' (aka 'unsigned long long') [-Wconversion]
                        chunksize[d] = pow((double)DEFAULT_CHUNK_SIZE/type_size, 
                                     ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1626:19: warning: implicit conversion changes signedness: 'int' to 'hsize_t' (aka 'unsigned long long') [-Wsign-conversion]
   dims[0] = att->len;
           ˜ ˜˜˜˜˜^˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1748:26: warning: implicit conversion changes signedness: 'int' to 'hsize_t' (aka 'unsigned long long') [-Wsign-conversion]
               dims[d] = field->dim_size[d];
                       ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:1966:70: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                           if (H5DSattach_scale(var->hdf_datasetid, dim1->hdf_dimscaleid, d) < 0)
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                           ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2204:88: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                        if (H5DSdetach_scale(var->hdf_datasetid, dim1->hdf_dimscaleid, d) < 0)
                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜                                           ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2350:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
         if (!(new_size = malloc(v1->ndims * sizeof(hsize_t))))
                                 ˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2639:13: warning: implicit conversion changes signedness: 'const ptrdiff_t' (aka 'const long') to 'unsigned long' [-Wsign-conversion]
         if(map[i] % mem_type_size != 0)        
            ^˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2641:30: warning: implicit conversion changes signedness: 'unsigned long' to 'ptrdiff_t' (aka 'long') [-Wsign-conversion]
         new_map[i] = map[i] / mem_type_size;
                    ˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2641:23: warning: implicit conversion changes signedness: 'const ptrdiff_t' (aka 'const long') to 'unsigned long' [-Wsign-conversion]
         new_map[i] = map[i] / mem_type_size;
                      ^˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2766:25: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         length[idim] = mymap[idim] * myedges[idim];
                        ^˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2767:55: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         stop[idim] = mystart[idim] + myedges[idim] * mystride[idim];
                                                    ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2838:33: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         data = (char *)data + (mymap[idim] * mem_type_size);
                                ^˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2840:27: warning: implicit conversion changes signedness: 'ptrdiff_t' (aka 'long') to 'unsigned long' [-Wsign-conversion]
         mystart[idim] += mystride[idim];
                       ˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2929:28: warning: implicit conversion changes signedness: 'signed char' to 'unsigned char' [-Wsign-conversion]
                  *ubp++ = *bp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2941:28: warning: implicit conversion changes signedness: 'signed char' to 'unsigned short' [-Wsign-conversion]
                  *usp++ = *bp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2962:28: warning: implicit conversion changes signedness: 'signed char' to 'unsigned int' [-Wsign-conversion]
                  *uip++ = *bp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2974:29: warning: implicit conversion changes signedness: 'signed char' to 'unsigned long long' [-Wsign-conversion]
                  *ulip++ = *bp++;
                          ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:2999:27: warning: implicit conversion changes signedness: 'unsigned char' to 'signed char' [-Wsign-conversion]
                  *bp++ = *ubp++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3061:28: warning: implicit conversion loses integer precision: 'short' to 'unsigned char' [-Wconversion]
                  *ubp++ = *sp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3069:27: warning: implicit conversion loses integer precision: 'short' to 'signed char' [-Wconversion]
                  *bp++ = *sp++;
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3081:28: warning: implicit conversion changes signedness: 'short' to 'unsigned short' [-Wsign-conversion]
                  *usp++ = *sp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3097:28: warning: implicit conversion changes signedness: 'short' to 'unsigned int' [-Wsign-conversion]
                  *uip++ = *sp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3109:29: warning: implicit conversion changes signedness: 'short' to 'unsigned long long' [-Wsign-conversion]
                  *ulip++ = *sp++;
                          ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3134:28: warning: implicit conversion loses integer precision: 'unsigned short' to 'unsigned char' [-Wconversion]
                  *ubp++ = *usp++;
                         ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3142:27: warning: implicit conversion loses integer precision: 'unsigned short' to 'signed char' [-Wconversion]
                  *bp++ = *usp++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3150:27: warning: implicit conversion changes signedness: 'unsigned short' to 'short' [-Wsign-conversion]
                  *sp++ = *usp++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3201:31: warning: implicit conversion loses integer precision: 'long' to 'unsigned char' [-Wconversion]
                     *ubp++ = *lp++;
                            ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3209:30: warning: implicit conversion loses integer precision: 'long' to 'signed char' [-Wconversion]
                     *bp++ = *lp++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3217:30: warning: implicit conversion loses integer precision: 'long' to 'short' [-Wconversion]
                     *sp++ = *lp++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3225:31: warning: implicit conversion loses integer precision: 'long' to 'unsigned short' [-Wconversion]
                     *usp++ = *lp++;
                            ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3265:32: warning: implicit conversion changes signedness: 'long' to 'unsigned long long' [-Wsign-conversion]
                     *ulip++ = *lp++;
                             ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3291:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
                     *ubp++ = *ip++;
                            ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3299:30: warning: implicit conversion loses integer precision: 'int' to 'signed char' [-Wconversion]
                     *bp++ = *ip++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3307:30: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
                     *sp++ = *ip++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3315:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
                     *usp++ = *ip++;
                            ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3343:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
                     *uip++ = *ip++;
                            ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3355:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long long' [-Wsign-conversion]
                     *ulip++ = *ip++;
                             ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3381:28: warning: implicit conversion loses integer precision: 'unsigned int' to 'unsigned char' [-Wconversion]
                  *ubp++ = *uip++;
                         ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3389:27: warning: implicit conversion loses integer precision: 'unsigned int' to 'signed char' [-Wconversion]
                  *bp++ = *uip++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3397:27: warning: implicit conversion loses integer precision: 'unsigned int' to 'short' [-Wconversion]
                  *sp++ = *uip++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3405:28: warning: implicit conversion loses integer precision: 'unsigned int' to 'unsigned short' [-Wconversion]
                  *usp++ = *uip++;
                         ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3421:30: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
                     *ip++ = *uip++;
                           ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3462:28: warning: implicit conversion loses integer precision: 'long long' to 'unsigned char' [-Wconversion]
                  *ubp++ = *lip++;
                         ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3470:27: warning: implicit conversion loses integer precision: 'long long' to 'signed char' [-Wconversion]
                  *bp++ = *lip++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3478:27: warning: implicit conversion loses integer precision: 'long long' to 'short' [-Wconversion]
                  *sp++ = *lip++;
                        ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3486:28: warning: implicit conversion loses integer precision: 'long long' to 'unsigned short' [-Wconversion]
                  *usp++ = *lip++;
                         ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3522:29: warning: implicit conversion changes signedness: 'long long' to 'unsigned long long' [-Wsign-conversion]
                  *ulip++ = *lip++;
                          ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3547:28: warning: implicit conversion loses integer precision: 'unsigned long long' to 'unsigned char' [-Wconversion]
                  *ubp++ = *ulip++;
                         ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3555:27: warning: implicit conversion loses integer precision: 'unsigned long long' to 'signed char' [-Wconversion]
                  *bp++ = *ulip++;
                        ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3563:27: warning: implicit conversion loses integer precision: 'unsigned long long' to 'short' [-Wconversion]
                  *sp++ = *ulip++;
                        ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3571:28: warning: implicit conversion loses integer precision: 'unsigned long long' to 'unsigned short' [-Wconversion]
                  *usp++ = *ulip++;
                         ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3588:30: warning: implicit conversion changes signedness: 'unsigned long long' to 'long' [-Wsign-conversion]
                     *lp++ = *ulip++;
                           ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3603:28: warning: implicit conversion changes signedness: 'unsigned long long' to 'long long' [-Wsign-conversion]
                  *lip++ = *ulip++;
                         ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3632:28: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned char' [-Wconversion]
                  *ubp++ = *fp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3640:27: warning: implicit conversion turns floating-point number into integer: 'float' to 'signed char' [-Wconversion]
                  *bp++ = *fp++;
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3648:27: warning: implicit conversion turns floating-point number into integer: 'float' to 'short' [-Wconversion]
                  *sp++ = *fp++;
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3656:28: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned short' [-Wconversion]
                  *usp++ = *fp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3664:28: warning: implicit conversion turns floating-point number into integer: 'float' to 'unsigned int' [-Wconversion]
                  *uip++ = *fp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3673:30: warning: implicit conversion turns floating-point number into integer: 'float' to 'long' [-Wconversion]
                     *lp++ = *fp++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3680:30: warning: implicit conversion turns floating-point number into integer: 'float' to 'int' [-Wconversion]
                     *ip++ = *fp++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3688:28: warning: implicit conversion turns floating-point number into integer: 'float' to 'long long' [-Wconversion]
                  *lip++ = *fp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3696:28: warning: implicit conversion turns floating-point number into integer: 'float' to 'long long' [-Wconversion]
                  *lip++ = *fp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3725:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'unsigned char' [-Wconversion]
                  *ubp++ = *dp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3733:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'signed char' [-Wconversion]
                  *bp++ = *dp++;
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3741:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'short' [-Wconversion]
                  *sp++ = *dp++;
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3749:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'unsigned short' [-Wconversion]
                  *usp++ = *dp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3757:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'unsigned int' [-Wconversion]
                  *uip++ = *dp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3766:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
                     *lp++ = *dp++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3773:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                     *ip++ = *dp++;
                           ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3781:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'long long' [-Wconversion]
                  *lip++ = *dp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3789:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'long long' [-Wconversion]
                  *lip++ = *dp++;
                         ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3797:27: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
                  *fp++ = *dp++;
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3244:33: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
                        *ip++ = *lp++;
                              ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3253:31: warning: implicit conversion loses integer precision: 'long' to 'unsigned int' [-Wshorten-64-to-32]
                     *uip++ = *lp++;
                            ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3494:28: warning: implicit conversion loses integer precision: 'long long' to 'unsigned int' [-Wshorten-64-to-32]
                  *uip++ = *lip++;
                         ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3510:30: warning: implicit conversion loses integer precision: 'long long' to 'int' [-Wshorten-64-to-32]
                     *ip++ = *lip++;
                           ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3579:28: warning: implicit conversion loses integer precision: 'unsigned long long' to 'unsigned int' [-Wshorten-64-to-32]
                  *uip++ = *ulip++;
                         ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3595:30: warning: implicit conversion loses integer precision: 'unsigned long long' to 'int' [-Wshorten-64-to-32]
                     *ip++ = *ulip++;
                           ˜ ^˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3900:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               if (!(h5dimlen = malloc(var->ndims * sizeof(hsize_t))))
                                       ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.c:3902:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
               if (!(h5dimlenmax = malloc(var->ndims * sizeof(hsize_t))))
                                          ˜˜˜˜˜^˜˜˜˜ ˜
95 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4internal.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4internal.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4internal.c:127:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            if (!(h5dimlen = malloc(dataset_ndims * sizeof(hsize_t))))
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4internal.c:129:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
            if (!(h5dimlenmax = malloc(dataset_ndims * sizeof(hsize_t))))
                                       ^˜˜˜˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4internal.c:876:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(field->dim_size = malloc(ndims * sizeof(int))))
                                     ^˜˜˜˜ ˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4type.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4type.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4type.c:280:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         *size = atomic_size[typeid];
               ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4type.c:397:21: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
         *nfieldsp = type->num_enum_members;
                   ˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4type.c:738:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(data, tmp->p, tmp->len * type_size);
                                 ˜ ^˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
trimmed_netcdf-4.2.1.1/libsrc4/nc4type.c:738:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   memcpy(data, tmp->p, tmp->len * type_size);
                                 ˜ ^˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c -o trimmed_netcdf-4.2.1.1/libsrc4/nc4var.o
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:132:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      real_size = size * MEGABYTE;
                ˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:135:21: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      real_nelems = nelems;
                  ˜ ^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:138:36: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
      real_preemption = preemption / 100.;
                      ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:198:26: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
      *sizep = real_size / MEGABYTE;
             ˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:305:64: warning: implicit conversion turns floating-point number into integer: 'double' to 'size_t' (aka 'unsigned long') [-Wconversion]
                               1/(double)(var->ndims - num_set)) * var->dim[d]->len - .5);
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:344:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           overhang = (num_chunks * var->chunksizes[d]) - var->dim[d]->len;
                       ^˜˜˜˜˜˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:345:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
           var->chunksizes[d] -= overhang / num_chunks;
                                          ˜ ^˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:342:65: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
       num_chunks = (var->dim[d]->len + var->chunksizes[d] - 1) / var->chunksizes[d];
                  ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:482:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (!(var->dim = calloc(ndims, sizeof(NC_DIM_INFO_T *))))
                       ˜˜˜˜˜˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:484:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (!(var->dimids = calloc(ndims, sizeof(int))))
                          ˜˜˜˜˜˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:512:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (!(var->chunksizes = calloc(var->ndims, sizeof(size_t))))
                              ˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:548:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      if (ndims && !(var->dimscale_attached = calloc(ndims, sizeof(int))))
                                              ˜˜˜˜˜˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:1000:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(cs = malloc(var->ndims * sizeof(size_t))))
                        ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:1011:20: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
         chunksizesp[i] = cs[i];
                        ˜ ^˜˜˜˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:1050:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      if (!(cs = malloc(var->ndims * sizeof(size_t))))
                        ˜˜˜˜˜^˜˜˜˜ ˜
trimmed_netcdf-4.2.1.1/libsrc4/nc4var.c:1055:15: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      cs[i] = chunksizesp[i];
            ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
16 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/include -Itrimmed_netcdf-4.2.1.1/ -Itrimmed_netcdf-4.2.1.1/include -I/usr/local/include    -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c trimmed_netcdf-4.2.1.1/libsrc4/ncfunc.c -o trimmed_netcdf-4.2.1.1/libsrc4/ncfunc.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o ncdfFlow.so bitOps.o init.o netCDF.o trimmed_netcdf-4.2.1.1/liblib/stub.o trimmed_netcdf-4.2.1.1/libdispatch/datt.o trimmed_netcdf-4.2.1.1/libdispatch/dattget.o trimmed_netcdf-4.2.1.1/libdispatch/dattinq.o trimmed_netcdf-4.2.1.1/libdispatch/dattput.o trimmed_netcdf-4.2.1.1/libdispatch/dcompound.o trimmed_netcdf-4.2.1.1/libdispatch/dcopy.o trimmed_netcdf-4.2.1.1/libdispatch/ddim.o trimmed_netcdf-4.2.1.1/libdispatch/ddispatch.o trimmed_netcdf-4.2.1.1/libdispatch/denum.o trimmed_netcdf-4.2.1.1/libdispatch/derror.o trimmed_netcdf-4.2.1.1/libdispatch/dfile.o trimmed_netcdf-4.2.1.1/libdispatch/dgroup.o trimmed_netcdf-4.2.1.1/libdispatch/dnclog.o trimmed_netcdf-4.2.1.1/libdispatch/dopaque.o trimmed_netcdf-4.2.1.1/libdispatch/dparallel.o trimmed_netcdf-4.2.1.1/libdispatch/dstring.o trimmed_netcdf-4.2.1.1/libdispatch/dsubstrate.o trimmed_netcdf-4.2.1.1/libdispatch/dtype.o trimmed_netcdf-4.2.1.1/libdispatch/dutf8proc.o trimmed_netcdf-4.2.1.1/libdispatch/dv2i.o trimmed_netcdf-4.2.1.1/libdispatch/dvar.o trimmed_netcdf-4.2.1.1/libdispatch/dvarget.o trimmed_netcdf-4.2.1.1/libdispatch/dvarinq.o trimmed_netcdf-4.2.1.1/libdispatch/dvarput.o trimmed_netcdf-4.2.1.1/libdispatch/dvlen.o trimmed_netcdf-4.2.1.1/libdispatch/nc_uri.o trimmed_netcdf-4.2.1.1/libdispatch/ncaux.o trimmed_netcdf-4.2.1.1/libdispatch/ncbytes.o trimmed_netcdf-4.2.1.1/libdispatch/nchashmap.o trimmed_netcdf-4.2.1.1/libdispatch/nclist.o trimmed_netcdf-4.2.1.1/libdispatch/nctime.o trimmed_netcdf-4.2.1.1/libsrc/attr.o trimmed_netcdf-4.2.1.1/libsrc/dim.o trimmed_netcdf-4.2.1.1/libsrc/lookup3.o trimmed_netcdf-4.2.1.1/libsrc/memio.o trimmed_netcdf-4.2.1.1/libsrc/nc.o trimmed_netcdf-4.2.1.1/libsrc/nc3dispatch.o trimmed_netcdf-4.2.1.1/libsrc/ncio.o trimmed_netcdf-4.2.1.1/libsrc/nclistmgr.o trimmed_netcdf-4.2.1.1/libsrc/ncx.o trimmed_netcdf-4.2.1.1/libsrc/posixio.o trimmed_netcdf-4.2.1.1/libsrc/putget.o trimmed_netcdf-4.2.1.1/libsrc/v1hpg.o trimmed_netcdf-4.2.1.1/libsrc/var.o trimmed_netcdf-4.2.1.1/libsrc4/error4.o trimmed_netcdf-4.2.1.1/libsrc4/nc4attr.o trimmed_netcdf-4.2.1.1/libsrc4/nc4dim.o trimmed_netcdf-4.2.1.1/libsrc4/nc4dispatch.o trimmed_netcdf-4.2.1.1/libsrc4/nc4file.o trimmed_netcdf-4.2.1.1/libsrc4/nc4grp.o trimmed_netcdf-4.2.1.1/libsrc4/nc4hdf.o trimmed_netcdf-4.2.1.1/libsrc4/nc4internal.o trimmed_netcdf-4.2.1.1/libsrc4/nc4type.o trimmed_netcdf-4.2.1.1/libsrc4/nc4var.o trimmed_netcdf-4.2.1.1/libsrc4/ncfunc.o -L/usr/lib -lhdf5 -lhdf5_hl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
cp ncdfFlow.so libncdfFlow.dylib 
cp libncdfFlow.dylib ../inst/lib
rm libncdfFlow.dylib
/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:6: warning: overriding commands for target `ncdfFlow.so'
Makevars:24: warning: ignoring old commands for target `ncdfFlow.so'
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ncdfFlow.Rcheck/ncdfFlow/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ncdfFlow)

ncdfFlow.Rcheck/ncdfFlow-Ex.timings:

nameusersystemelapsed
addFrame-methods1.4870.0561.583
clone.ncdfFlowSet1.2280.0741.337
ncdfFlowList-class5.3260.6686.391
read.ncdfFlowSet0.6200.1830.816