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Package 432/671HostnameOS / ArchBUILDCHECKBUILD BIN
multtest 2.16.0
Katherine S. Pollard
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/multtest
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: multtest
Version: 2.16.0
Command: rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R multtest.buildbin-libdir
StartedAt: 2013-05-01 12:40:21 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:40:31 -0700 (Wed, 01 May 2013)
EllapsedTime: 9.3 seconds
RetCode: 0
Status:  OK 
PackageFile: multtest_2.16.0.tgz
PackageFileSize: 1.416 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=multtest.buildbin-libdir multtest_2.16.0.tar.gz'
>>>>>>> 

* installing *source* package 'multtest' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c Rpack.c -o Rpack.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c VScount.c -o VScount.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c block_sampling_fixed.c -o block_sampling_fixed.o
block_sampling_fixed.c:57:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(l_L,L,sizeof(int)*n);
                            ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
block_sampling_fixed.c:57:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(l_L,L,sizeof(int)*n);
                            ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
block_sampling_fixed.c:74:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_order_block,sizeof(int)*l_n);
                                      ˜^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
block_sampling_fixed.c:74:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_order_block,sizeof(int)*l_n);
                                      ˜^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
block_sampling_fixed.c:87:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_L,sizeof(int)*l_n);
                            ˜^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
block_sampling_fixed.c:87:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_L,sizeof(int)*l_n);
                            ˜^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c bootloop.c -o bootloop.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mt.c -o mt.o
mt.c:65:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(pdata->L,0,sizeof(int)*ncol);
                               ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:65:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(pdata->L,0,sizeof(int)*ncol);
                               ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
mt.c:148:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count,0,sizeof(float)*nrow);
                              ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:148:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count,0,sizeof(float)*nrow);
                              ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
mt.c:150:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total,0,sizeof(int)*nrow);
                            ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:150:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total,0,sizeof(int)*nrow);
                            ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
mt.c:484:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count1,0,sizeof(float)*nrow);
                               ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:484:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count1,0,sizeof(float)*nrow);
                               ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
mt.c:486:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total1,0,sizeof(int)*nrow);
                             ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:486:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total1,0,sizeof(int)*nrow);
                             ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
mt.c:488:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count2,0,sizeof(float)*nrow);
                               ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:488:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(count2,0,sizeof(float)*nrow);
                               ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
mt.c:490:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total2,0,sizeof(int)*nrow);
                             ˜^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
mt.c:490:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(total2,0,sizeof(int)*nrow);
                             ˜^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
14 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c pairt_sampling.c -o pairt_sampling.o
pairt_sampling.c:25:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
  l_len=floor(log(imax+1.0)/log(2));
       ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
pairt_sampling.c:26:8: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
  l_sz=ceil(n/(l_len*1.0));
      ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
pairt_sampling.c:127:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(L,0,sizeof(unsigned int)*n);
                                 ˜^
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
pairt_sampling.c:127:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(L,0,sizeof(unsigned int)*n);
                                 ˜^
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
pairt_sampling_fixed.c:21:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_L,L,sizeof(int)*n);
                          ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
pairt_sampling_fixed.c:21:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_L,L,sizeof(int)*n);
                          ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
pairt_sampling_fixed.c:35:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_L,sizeof(int)*l_n);
                            ˜^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
pairt_sampling_fixed.c:35:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_L,sizeof(int)*l_n);
                            ˜^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c random.c -o random.o
random.c:48:10: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  z1=abs(seed); /*setting the seed to z1 and initialize it*/
     ˜˜˜ ^˜˜˜
random.c:83:6: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
  i=y/N_DIV; /*N_DIV=(1+P1/N_SHUFF);to make sure i to be 0..N_SHUFF-1*/
   ˜˜^˜˜˜˜˜
random.c:109:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
      j=i+floor(f);
       ˜˜^˜˜˜˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c sampling.c -o sampling.o
sampling.c:91:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(permun,ordern,sizeof(int)*n);
                                      ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:91:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      memcpy(permun,ordern,sizeof(int)*n);
                                      ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
sampling.c:157:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(pa->nk,0,sizeof(int)*pa->k);
                             ˜˜˜˜˜^
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:157:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(pa->nk,0,sizeof(int)*pa->k);
                             ˜˜˜˜˜^
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
sampling.c:162:8: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
  imax=˜0; /*get all bits are 1 for the integars*/
      ˜^˜
sampling.c:163:11: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
  pa->len=floor(log(imax+1.0)/log(pa->k)); 
         ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
sampling.c:164:10: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
  pa->sz=ceil(n/(pa->len*1.0));
        ˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
sampling.c:176:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(L,0,sizeof(unsigned int)*pa->n);
                                 ˜˜˜˜˜^
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
sampling.c:176:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(L,0,sizeof(unsigned int)*pa->n);
                                 ˜˜˜˜˜^
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
sampling.c:183:15: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      L[i]=val%(unsigned int)(pa->k);
          ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
10 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c sampling_fixed.c -o sampling_fixed.o
sampling_fixed.c:27:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_L,L,sizeof(int)*n);
                          ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling_fixed.c:27:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_L,L,sizeof(int)*n);
                          ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
sampling_fixed.c:36:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(l_nk,0,sizeof(int)*k);
                           ˜^
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
   ? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest))     \
                                        ^
sampling_fixed.c:36:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memset(l_nk,0,sizeof(int)*k);
                           ˜^
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
   : __inline_memset_chk (dest, val, len))
                                     ^
sampling_fixed.c:63:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_L,sizeof(int)*l_n);
                            ˜^˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling_fixed.c:63:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(L,l_L,sizeof(int)*l_n);
                            ˜^˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
sampling_fixed.c:74:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_permun,l_ordern,sizeof(int)*n);
                                      ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
sampling_fixed.c:74:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(l_permun,l_ordern,sizeof(int)*n);
                                      ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c stat_func.c -o stat_func.o
stat_func.c:552:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV,B,sizeof(int)*(n-k));
                              ˜ ˜^˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:552:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV,B,sizeof(int)*(n-k));
                              ˜ ˜^˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:553:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV+(n-k),A,sizeof(int)*k);
                                    ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:553:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV+(n-k),A,sizeof(int)*k);
                                    ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:555:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(V,tempV,sizeof(int)*n);
                              ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:555:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(V,tempV,sizeof(int)*n);
                              ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:568:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempV,A,sizeof(int)*i);
                            ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:568:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempV,A,sizeof(int)*i);
                            ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:571:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV+k,B,sizeof(int)*(j+1));
                                ˜ ˜^˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:571:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV+k,B,sizeof(int)*(j+1));
                                ˜ ˜^˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:578:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(cpyV,B+j+1,sizeof(int)*((n-k)-(j+1)));
                               ˜ ˜˜˜˜˜^˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:578:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(cpyV,B+j+1,sizeof(int)*((n-k)-(j+1)));
                               ˜ ˜˜˜˜˜^˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:580:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(cpyV+(n-k)-(j+1),A+i+1,sizeof(int)*(k-(i+1)));
                                             ˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:580:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(cpyV+(n-k)-(j+1),A+i+1,sizeof(int)*(k-(i+1)));
                                             ˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:581:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempV+i,cpyV,sizeof(int)*(k-i));
                                 ˜ ˜^˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:581:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(tempV+i,cpyV,sizeof(int)*(k-i));
                                 ˜ ˜^˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:584:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV+k+j+2,cpyV+(k-i),sizeof(int)*((n-k)-(j+2)));
                                             ˜ ˜˜˜˜˜^˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:584:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(tempV+k+j+2,cpyV+(k-i),sizeof(int)*((n-k)-(j+2)));
                                             ˜ ˜˜˜˜˜^˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:586:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(V,tempV,sizeof(int)*n);
                            ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:586:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(V,tempV,sizeof(int)*n);
                            ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
stat_func.c:646:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(cpyV,V,sizeof(int)*n);
                           ˜^
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
stat_func.c:646:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  memcpy(cpyV,V,sizeof(int)*n);
                           ˜^
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
22 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DUSEDOUBLE -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c stat_order.c -o stat_order.o
stat_order.c:65:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort(R,n,sizeof(R[0]),cmp_mult);
  ˜˜˜˜˜   ^
stat_order.c:75:11: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  qsort(R,n,sizeof(R[0]),func_cmp);
  ˜˜˜˜˜   ^
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/multtest.buildbin-libdir/multtest/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'as.list' from package 'base' in package 'multtest'
Creating a generic function for 'update' from package 'stats' in package 'multtest'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (multtest)


>>>>>>> 
>>>>>>> FIXING LINKS FOR multtest.buildbin-libdir/multtest/libs//multtest.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"