makecdfenv 1.36.0
James W. MacDonald
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/makecdfenv | | Last Changed Rev: 75289 / Revision: 76155 | | Last Changed Date: 2013-04-04 10:51:44 -0700 (Thu, 04 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=makecdfenv.buildbin-libdir makecdfenv_1.36.0.tar.gz'
>>>>>>>
* installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1 -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c read_cdffile.c -o read_cdffile.o
read_cdffile.c:406:15: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
stringLen = strcspn(retour, "\t");
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile.c:443:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (strncmp(search_string, buffy, size) == 0) {
˜˜˜˜˜˜˜ ^˜˜˜
read_cdffile.c:432:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
size = strlen(search_string);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile.c:490:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (strncmp(search_string, buffy, size) == 0) {
˜˜˜˜˜˜˜ ^˜˜˜
read_cdffile.c:475:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
size = strlen(search_string);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile.c:538:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (strncmp(search_string, buffy, size) == 0) {
˜˜˜˜˜˜˜ ^˜˜˜
read_cdffile.c:539:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
result_string = R_alloc( SIZE_LINE-size, SIZE_CHAR );
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜
read_cdffile.c:527:10: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
size = strlen(search_string);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile.c:652:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
x = atof(buffer);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_cdffile.c:656:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
y = atof(buffer);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_cdffile.c:681:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
stringLen = strcspn(buffer2, "\t");
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
11 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (makecdfenv)
>>>>>>>
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"