iSeq 1.12.0
Qianxing Mo
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/iSeq | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iSeq.buildbin-libdir iSeq_1.12.0.tar.gz'
>>>>>>>
* installing *source* package 'iSeq' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c iSeq.c -o iSeq.o
iSeq.c:208:20: warning: unused variable 'j' [-Wunused-variable]
int sampleSize,i,j,r,n0,n1,state,nrowm1,sumxx;
^
iSeq.c:697:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
istart = (int *)R_alloc(*xrow,sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
iSeq.c:698:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
iend = (int *)R_alloc(*xrow,sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
iSeq.c:710:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
maxden1 = 1.0*count1[0]/(gend[0]-gstart[0]+1);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
iSeq.c:711:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
maxden2 = 1.0*count2[0]/(gend[0]-gstart[0]+1);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
iSeq.c:721:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
iden1 = 1.0*count1[i]/idist;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
iSeq.c:722:26: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
iden2 = 1.0*count2[i]/idist;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
iSeq.c:788:80: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
maxden1 = (1.0*count1[istart[j]]/idistC + 1.0*count1[istart[j]+1]/idistN)/2.0;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
iSeq.c:789:80: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
maxden2 = (1.0*count2[istart[j]]/idistC + 1.0*count2[istart[j]+1]/idistN)/2.0;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
iSeq.c:796:82: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
iden1 = (1.0*count1[i-1]/idistP + 1.0*count1[i]/idistC + 1.0*count1[i+1]/idistN)/3.0;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
iSeq.c:797:82: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
iden2 = (1.0*count2[i-1]/idistP + 1.0*count2[i]/idistC + 1.0*count2[i+1]/idistN)/3.0;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
iSeq.c:811:62: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
iden1 = (1.0*count1[i-1]/idistP + 1.0*count1[i]/idistC)/2.0;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
iSeq.c:812:62: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
iden2 = (1.0*count2[i-1]/idistP + 1.0*count2[i]/idistC)/2.0;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
iSeq.c:834:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
J = (int *)R_alloc(*klen,sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
14 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o iSeq.so iSeq.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/iSeq.buildbin-libdir/iSeq/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iSeq)
>>>>>>>
>>>>>>> FIXING LINKS FOR iSeq.buildbin-libdir/iSeq/libs//iSeq.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "iSeq.buildbin-libdir/iSeq/libs//iSeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "iSeq.buildbin-libdir/iSeq/libs//iSeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "iSeq.buildbin-libdir/iSeq/libs//iSeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "iSeq.buildbin-libdir/iSeq/libs//iSeq.so"