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Package 230/631HostnameOS / ArchBUILDCHECKBUILD BIN
gCMAP 1.2.1
Thomas Sandmann
Snapshot Date: 2013-01-15 17:01:14 -0800 (Tue, 15 Jan 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gCMAP
Last Changed Rev: 72495 / Revision: 72575
Last Changed Date: 2013-01-13 21:22:29 -0800 (Sun, 13 Jan 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  ERROR  skipped 
lamb2 Linux (openSUSE 11.4) / x86_64 [ ERROR ] skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
petty Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: gCMAP
Version: 1.2.1
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gCMAP
StartedAt: 2013-01-15 23:54:42 -0800 (Tue, 15 Jan 2013)
EndedAt: 2013-01-15 23:56:58 -0800 (Tue, 15 Jan 2013)
EllapsedTime: 135.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘gCMAP/DESCRIPTION’ ... OK
* preparing ‘gCMAP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: GSEABase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
    cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unlist

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    ‘browseVignettes()’. To cite Bioconductor, see
    ‘citation("Biobase")’, and for packages ‘citation("pkgname")’.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: graph
Loading required package: DESeq
Loading required package: locfit
locfit 1.5-8 	 2012-04-25
Loading required package: lattice

bigmemory >= 4.0 is a major revision since 3.1.2; please see package
biganalytics and http://www.bigmemory.org for more information.

Attaching to on-disk data:/tmp/Rtmpns6FEg/file43d17ea58bbc_z.desc.rds...

Loading required package: bigmemory
Loading required package: bigmemory
Loading required package: bigmemory.sri
Loading required package: bigmemory.sri
Design is based on ‘predictor’ parameter.

Error: processing vignette ‘gCMAP.Rnw’ failed with diagnostics:
 chunk 13 (label = self_contained) 
Error in UseMethod("mroast") : 
  no applicable method for ‘mroast’ applied to an object of class "list"
Execution halted