Package: flowViz

Version: 1.23.2

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings flowViz_1.23.2.tar.gz

StartedAt: 2013-01-16 02:33:34 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 02:36:59 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 205.8 seconds

RetCode: 0

Status:  OK

CheckDir: flowViz.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/flowViz.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowViz’ version ‘1.23.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowViz’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc   9.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gltext: no visible global function definition for ‘unit’
gltext: no visible global function definition for ‘gpar’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
xyplot                 31.098  0.120  31.225
ecdfplot               23.001  0.180  23.183
latticeMethods-flowSet 16.221  0.268  16.494
densityplot            12.313  0.204  12.574
splom                  12.253  0.156  12.413
timeLinePlot-methods    7.408  0.040   7.445
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/flowViz.Rcheck/00check.log’
for details.

* installing *source* package ‘flowViz’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘filters.Rnw’ 
** testing if installed package can be loaded

* DONE (flowViz)

name	user	system	elapsed
contour-methods	3.284	0.100	3.404
densityplot	12.313	0.204	12.574
ecdfplot	23.001	0.180	23.183
flowPlot	0.916	0.052	0.971
flowViz-package	0.004	0.000	0.003
flowViz.par.get	0.016	0.004	0.018
latticeMethods-flowSet	16.221	0.268	16.494
splom	12.253	0.156	12.413
timeLinePlot-methods	7.408	0.040	7.445
xyplot	31.098	0.120	31.225