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Package 218/671HostnameOS / ArchBUILDCHECKBUILD BIN
ffpe 1.4.0
Levi Waldron
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/ffpe
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ WARNINGS ] OK 

Summary

Package: ffpe
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ffpe_1.4.0.tar.gz
StartedAt: 2013-05-01 05:11:48 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 05:18:34 -0700 (Wed, 01 May 2013)
EllapsedTime: 405.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: ffpe.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/ffpe.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ffpe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ffpe' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'ffpe' can be installed ... [36s/40s] WARNING
Found the following significant warnings:
  Warning: no function found corresponding to methods exports from 'minfi' for: 'pData'
  Warning: no function found corresponding to methods exports from 'minfi' for: 'pData'
See '/Users/biocbuild/bbs-2.12-bioc/meat/ffpe.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [49s/50s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
CATplot      14.697  0.592  15.699
ffpe-package  6.227  0.509   6.862
sampleQC      5.595  0.427   6.187
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/ffpe.Rcheck/00check.log'
for details.

ffpe.Rcheck/00install.out:

* installing *source* package 'ffpe' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'image' when loading 'graphics'
Warning: no function found corresponding to methods exports from 'minfi' for: 'pData'
Warning: replacing previous import 'nleqslv' when loading 'nleqslv'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'image' when loading 'graphics'
Warning: no function found corresponding to methods exports from 'minfi' for: 'pData'
Warning: replacing previous import 'nleqslv' when loading 'nleqslv'
* DONE (ffpe)

ffpe.Rcheck/ffpe-Ex.timings:

nameusersystemelapsed
CATplot14.697 0.59215.699
ffpe-package6.2270.5096.862
sampleQC5.5950.4276.187
sortedIqrPlot1.8740.3102.225