Package: clipper

Version: 0.99.3

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data clipper

StartedAt: 2013-01-16 00:05:43 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 00:06:29 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 45.6 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file ‘clipper/DESCRIPTION’ ... OK
* preparing ‘clipper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: DBI
Loading required package: AnnotationDbi
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, as.data.frame, cbind, colnames,
    duplicated, eval, get, intersect, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rep.int, rownames, sapply,
    setdiff, sort, table, tapply, union, unique,
    unlist

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with ‘browseVignettes()’. To cite Bioconductor,
    see ‘citation("Biobase")’, and for packages
    ‘citation("pkgname")’.


Loading required package: org.Hs.eg.db


Error: processing vignette ‘clipper.Rnw’ failed with diagnostics:
 chunk 10 (label = pathQUsage) 
Error in .class1(object) : could not find function "Matrix"
Execution halted