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Package 20/671HostnameOS / ArchBUILDCHECKBUILD BIN
affyio 1.28.0
Benjamin Milo Bolstad
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/affyio
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ WARNINGS ] OK 

Summary

Package: affyio
Version: 1.28.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch affyio_1.28.0.tar.gz
StartedAt: 2013-05-01 01:57:46 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 01:58:15 -0700 (Wed, 01 May 2013)
EllapsedTime: 29.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: affyio.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/affyio.Rcheck'
* using R version 3.0.0 Patched (2013-04-08 r62531)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'affyio/DESCRIPTION' ... OK
* this is package 'affyio' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'affyio' can be installed ... [7s/8s] WARNING
Found the following significant warnings:
  read_generic.c:1786:7: warning: variable 'tmp_sexp' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
See '/Users/biocbuild/bbs-2.12-bioc/meat/affyio.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File '/Users/biocbuild/bbs-2.12-bioc/meat/affyio.Rcheck/affyio/libs/affyio.so':
  Found '_printf', possibly from 'printf' (C)
    Objects: 'fread_functions.o', 'read_generic.o'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/affyio.Rcheck/00check.log'
for details.

affyio.Rcheck/00install.out:

* installing *source* package 'affyio' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for main in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
checking for pthread_create in -lpthread... yes
checking if we can use pthreads... yes
checking if PTHREAD_STACK_MIN is defined... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c fread_functions.c -o fread_functions.o
fread_functions.c:32:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(int),n,instream);
           ˜˜˜˜˜                         ^
fread_functions.c:53:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(unsigned int),n,instream);
           ˜˜˜˜˜                                  ^
fread_functions.c:72:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = fread(destination,sizeof(short),n,instream);
            ˜˜˜˜˜                           ^
fread_functions.c:89:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = fread(destination,sizeof(unsigned short),n,instream);
            ˜˜˜˜˜                                    ^
fread_functions.c:126:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(float),n,instream);
           ˜˜˜˜˜                           ^
fread_functions.c:142:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(char),n,instream);
           ˜˜˜˜˜                          ^
fread_functions.c:159:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(unsigned char),n,instream);
           ˜˜˜˜˜                                   ^
fread_functions.c:201:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(double),n,instream);
           ˜˜˜˜˜                            ^
fread_functions.c:225:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(int),n,instream);
           ˜˜˜˜˜                         ^
fread_functions.c:246:51: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(unsigned int),n,instream);
           ˜˜˜˜˜                                  ^
fread_functions.c:265:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = fread(destination,sizeof(short),n,instream);
            ˜˜˜˜˜                           ^
fread_functions.c:270:45: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
     *destination=(((*destination>>8)&0xff) | ((*destination&0xff)<<8));
                 ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:284:54: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = fread(destination,sizeof(unsigned short),n,instream);
            ˜˜˜˜˜                                    ^
fread_functions.c:289:45: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
     *destination=(((*destination>>8)&0xff) | ((*destination&0xff)<<8));
                 ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:319:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(float),n,instream);
           ˜˜˜˜˜                           ^
fread_functions.c:339:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(char),n,instream);
           ˜˜˜˜˜                          ^
fread_functions.c:355:52: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(unsigned char),n,instream);
           ˜˜˜˜˜                                   ^
fread_functions.c:372:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination, sizeof(wchar_t), n, instream);
           ˜˜˜˜˜                               ^
fread_functions.c:384:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = fread(destination,sizeof(double),n,instream);
           ˜˜˜˜˜                            ^
fread_functions.c:414:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(int)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:414:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(int)*n); 
                                                  ˜^
fread_functions.c:439:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned int)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:439:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned int)*n); 
                                                           ˜^
fread_functions.c:458:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(short)*n);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:458:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(short)*n);
                                                     ˜^
fread_functions.c:476:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(unsigned short)*n);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:476:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(unsigned short)*n);
                                                              ˜^
fread_functions.c:497:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result =  gzread(instream,destination,sizeof(float)*n); 
         ˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:497:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result =  gzread(instream,destination,sizeof(float)*n); 
                                                     ˜^
fread_functions.c:513:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(char)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:513:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(char)*n); 
                                                   ˜^
fread_functions.c:529:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned char)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:529:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned char)*n); 
                                                            ˜^
fread_functions.c:547:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream, destination,sizeof(double)*n);
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:547:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream, destination,sizeof(double)*n);
                                                      ˜^
fread_functions.c:575:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(int)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:575:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(int)*n); 
                                                  ˜^
fread_functions.c:600:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned int)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:600:61: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned int)*n); 
                                                           ˜^
fread_functions.c:620:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(short)*n);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:620:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(short)*n);
                                                     ˜^
fread_functions.c:625:45: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
     *destination=(((*destination>>8)&0xff) | ((*destination&0xff)<<8));  
                 ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:636:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(unsigned short)*n);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:636:64: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   result = gzread(instream,destination,sizeof(unsigned short)*n);
                                                              ˜^
fread_functions.c:641:45: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
     *destination=(((*destination>>8)&0xff) | ((*destination&0xff)<<8));  
                 ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:656:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result =  gzread(instream,destination,sizeof(float)*n); 
         ˜  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:656:55: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result =  gzread(instream,destination,sizeof(float)*n); 
                                                     ˜^
fread_functions.c:673:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(char)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:673:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(char)*n); 
                                                   ˜^
fread_functions.c:690:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned char)*n); 
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:690:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream,destination,sizeof(unsigned char)*n); 
                                                            ˜^
fread_functions.c:706:12: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  result = gzread(instream, destination,sizeof(double)*n);
         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fread_functions.c:706:56: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  result = gzread(instream, destination,sizeof(double)*n);
                                                      ˜^
fread_functions.c:300:13: warning: unused function 'swap_uint_32' [-Wunused-function]
static void swap_uint_32(unsigned int *tni4)              /* 4 byte integer numbers */
            ^
54 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_abatch.c -o read_abatch.o
read_abatch.c:310:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    my_tokenset->tokens = Realloc(my_tokenset->tokens,my_tokenset->n,char*);
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_abatch.c:409:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int tokenlength = strlen(token);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:410:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int ends_length = strlen(ends_in);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:518:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    match = strncmp(starts, buffer, starts_len);
            ˜˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜
read_abatch.c:513:20: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int starts_len = strlen(starts);
      ˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:1421:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    match = strncmp(starts, buffer, starts_len);
            ˜˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜
read_abatch.c:1416:20: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int starts_len = strlen(starts);
      ˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:2496:60: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  if (!fread(this_header->header,sizeof(char),this_header->header_len,infile)){
       ˜˜˜˜˜                                  ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
read_abatch.c:2846:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      fread_err = fread_float32(&(cur_intensity->cur_intens),1,my_header->infile);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:2899:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      fread_err = fread_float32(&(cur_intensity->cur_intens),1,my_header->infile);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:2946:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      fread_err = fread_float32(&(cur_intensity->cur_intens),1,my_header->infile);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:3069:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  *nmasks = my_header->n_masks;
          ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
read_abatch.c:3081:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  *noutliers = my_header->n_outliers;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
read_abatch.c:3245:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  if (!gzread(infile,this_header->header,sizeof(char)*this_header->header_len)){
                                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
read_abatch.c:3585:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      fread_err = gzread_float32(&(cur_intensity->cur_intens),1,my_header->gzinfile);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:3638:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      fread_err = gzread_float32(&(cur_intensity->cur_intens),1,my_header->gzinfile);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:3686:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
      fread_err = gzread_float32(&(cur_intensity->cur_intens),1,my_header->gzinfile);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_abatch.c:3798:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  *nmasks = my_header->n_masks;
          ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
read_abatch.c:3810:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
  *noutliers = my_header->n_outliers;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
read_abatch.c:4367:9: warning: unused variable 'Current_intensity' [-Wunused-variable]
   SEXP Current_intensity;
        ^
read_abatch.c:4376:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
read_abatch.c:4385:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
read_abatch.c:4542:84: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(cur_indexes[i], NUMERIC_POINTER(AS_NUMERIC(curIndices)), sizeof(double)*n_probes[i]*2);
                                                                                  ˜^˜˜˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
   ? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest))     \
                                        ^
read_abatch.c:4542:84: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    memcpy(cur_indexes[i], NUMERIC_POINTER(AS_NUMERIC(curIndices)), sizeof(double)*n_probes[i]*2);
                                                                                  ˜^˜˜˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
   : __inline_memcpy_chk (dest, src, len))
                                     ^
24 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_bpmap.c -o read_bpmap.o
read_bpmap.c:110:18: warning: implicit conversion changes signedness: 'unsigned long' to 'long' [-Wsign-conversion]
    fseek(infile,-sizeof(float),SEEK_CUR);
    ˜˜˜˜˜        ^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:78:7: warning: unused variable 'version_number_int' [-Wunused-variable]
  int version_number_int;
      ^
read_bpmap.c:190:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
    fread_be_char(seq_name,seq_name_length,infile);
    ˜˜˜˜˜˜˜˜˜˜˜˜˜          ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:238:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = n_probes;
                         ˜ ^˜˜˜˜˜˜˜
read_bpmap.c:244:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = n_probes;
                         ˜ ^˜˜˜˜˜˜˜
read_bpmap.c:253:32: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      fread_be_char(group_name,group_name_length,infile);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:264:36: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      fread_be_char(version_number,version_number_length,infile);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:275:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = number_parameters;
                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:286:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        fread_be_char(param_name,param_length,infile);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:291:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        fread_be_char(param_name,param_length,infile);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:306:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = probe_mapping_type;
                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:312:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = seq_file_offset;
                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:318:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = n_probes;
                         ˜ ^˜˜˜˜˜˜˜
read_bpmap.c:324:32: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      fread_be_char(group_name,group_name_length,infile);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:334:36: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      fread_be_char(version_number,version_number_length,infile);
      ˜˜˜˜˜˜˜˜˜˜˜˜˜                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:344:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(tmpSXP)[0] = number_parameters;
                         ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:357:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        fread_be_char(param_name,param_length,infile);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:362:27: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        fread_be_char(param_name,param_length,infile);
        ˜˜˜˜˜˜˜˜˜˜˜˜˜            ^˜˜˜˜˜˜˜˜˜˜˜
read_bpmap.c:736:25: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(xPM)[j] = x;
                      ˜ ^
read_bpmap.c:737:25: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(yPM)[j] = y;
                      ˜ ^
read_bpmap.c:740:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        INTEGER(xMM)[j] = x_mm;
                        ˜ ^˜˜˜
read_bpmap.c:741:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
        INTEGER(yMM)[j] = y_mm;
                        ˜ ^˜˜˜
read_bpmap.c:791:32: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
      INTEGER(PMposition)[j] = positionPM;
                             ˜ ^˜˜˜˜˜˜˜˜˜
read_bpmap.c:864:13: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wconversion]
  version = REAL(VECTOR_ELT(bpmapHeader,1))[0];
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
24 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_cdf_xda.c -o read_cdf_xda.o
read_cdf_xda.c:617:11: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
  pbase = toupper(pbase);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdf_xda.c:618:11: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
  tbase = toupper(tbase);
        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_cdffile2.c -o read_cdffile2.o
read_cdffile2.c:271:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    my_tokenset->tokens = Realloc(my_tokenset->tokens,my_tokenset->n,char*);
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_cdffile2.c:366:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int tokenlength = strlen(token);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile2.c:367:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int ends_length = strlen(ends_in);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile2.c:433:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    match = strncmp(starts, buffer, starts_len);
            ˜˜˜˜˜˜˜                 ^˜˜˜˜˜˜˜˜˜
read_cdffile2.c:428:20: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int starts_len = strlen(starts);
      ˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile2.c:609:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    mycdf->qc_units[i].n_probes = atoi(get_token(cur_tokenset,1));
                                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_cdffile2.c:364:12: warning: unused function 'token_ends_with' [-Wunused-function]
static int token_ends_with(char *token, char *ends_in){
           ^
7 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c:126:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(cdfName, wchartemp, size);
  ˜˜˜˜˜˜˜˜                     ^˜˜˜
read_celfile_generic.c:176:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(header_info->cdfName, wchartemp, size);
  ˜˜˜˜˜˜˜˜                                  ^˜˜˜
read_celfile_generic.c:235:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(header_info->DatHeader, wchartemp, size);
    ˜˜˜˜˜˜˜˜                                    ^˜˜˜
read_celfile_generic.c:248:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(header_info->ScanDate, wchartemp, size);
    ˜˜˜˜˜˜˜˜                                   ^˜˜˜
read_celfile_generic.c:260:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(header_info->Algorithm, wchartemp, size);
  ˜˜˜˜˜˜˜˜                                    ^˜˜˜
read_celfile_generic.c:279:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:285:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:291:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:301:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:307:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:312:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 12, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:322:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:328:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:333:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:343:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:349:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:354:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:364:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:370:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:375:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 14, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:385:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:391:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:396:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 17, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:406:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:412:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:417:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 18, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:427:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:433:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:438:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 26, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:448:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:454:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:461:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 18, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:471:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:477:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:485:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 20, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:495:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:501:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:507:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 20, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:517:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:523:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:529:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 12, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:538:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:544:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:550:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 16, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:559:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:565:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:572:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:582:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:588:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:594:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 8, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:604:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:610:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:617:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:665:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(cdfName, wchartemp, size);
  ˜˜˜˜˜˜˜˜                     ^˜˜˜
read_celfile_generic.c:737:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_celfile_generic.c:737:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_celfile_generic.c:708:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:710:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:707:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:790:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_celfile_generic.c:790:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_celfile_generic.c:758:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:760:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:757:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:849:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_celfile_generic.c:849:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_celfile_generic.c:811:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:812:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:814:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:918:28: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *noutliers = my_data_set.nrows;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_celfile_generic.c:936:25: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *nmasks = my_data_set.nrows;
          ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_celfile_generic.c:873:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:874:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:876:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:962:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:968:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:1138:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(cdfName, wchartemp, size);
  ˜˜˜˜˜˜˜˜                     ^˜˜˜
read_celfile_generic.c:1188:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(header_info->cdfName, wchartemp, size);
  ˜˜˜˜˜˜˜˜                                  ^˜˜˜
read_celfile_generic.c:1246:49: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(header_info->DatHeader, wchartemp, size);
    ˜˜˜˜˜˜˜˜                                    ^˜˜˜
read_celfile_generic.c:1259:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(header_info->ScanDate, wchartemp, size);
    ˜˜˜˜˜˜˜˜                                   ^˜˜˜
read_celfile_generic.c:1271:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(header_info->Algorithm, wchartemp, size);
  ˜˜˜˜˜˜˜˜                                    ^˜˜˜
read_celfile_generic.c:1290:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1296:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1302:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1312:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1318:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1323:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 12, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1333:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1339:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1344:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1354:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1360:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1365:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1375:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1381:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1386:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 14, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1396:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1402:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1407:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 17, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1417:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1423:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1428:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 18, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1438:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1444:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1449:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 26, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1459:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1465:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1472:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 18, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1482:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1488:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1496:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 20, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1506:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1512:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1518:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 20, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1528:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1534:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1540:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 12, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1549:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1555:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1561:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 16, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1570:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1576:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1583:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 11, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1593:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1599:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1605:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 8, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1615:109: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + size +1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1621:102: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1628:100: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  header_info->AlgorithmParameters = Realloc(header_info->AlgorithmParameters, algorithm_paramsize + 1, char);
                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_celfile_generic.c:1676:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  wcstombs(cdfName, wchartemp, size);
  ˜˜˜˜˜˜˜˜                     ^˜˜˜
read_celfile_generic.c:1741:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_celfile_generic.c:1741:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_celfile_generic.c:1714:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:1711:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:1712:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:1795:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_celfile_generic.c:1795:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_celfile_generic.c:1765:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:1762:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:1763:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:1854:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_celfile_generic.c:1854:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_celfile_generic.c:1817:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:1819:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:1816:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:1926:28: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *noutliers = my_data_set.nrows;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_celfile_generic.c:1944:25: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *nmasks = my_data_set.nrows;
          ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_celfile_generic.c:1881:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:1882:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_celfile_generic.c:1884:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_celfile_generic.c:1970:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_celfile_generic.c:1976:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
152 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_clf.c -o read_clf.o
read_clf.c:195:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    my_tokenset->tokens = Realloc(my_tokenset->tokens,my_tokenset->n,char*);
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_clf.c:294:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int tokenlength = strlen(token);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜
read_clf.c:295:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int ends_length = strlen(ends_in);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_clf.c:576:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->chip_type = Realloc(header->chip_type, header->n_chip_type+1, char *);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_clf.c:624:91: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->other_headers_keys = Realloc(header->other_headers_keys,header->n_other_headers+1, char *);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_clf.c:625:95: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->other_headers_values = Realloc(header->other_headers_values,header->n_other_headers+1, char *);
                                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_clf.c:626:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->chip_type = Realloc(header->chip_type, header->n_chip_type+1, char *);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_clf.c:557:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
read_clf.c:292:12: warning: unused function 'token_ends_with' [-Wunused-function]
static int token_ends_with(char *token, char *ends_in){
           ^
read_clf.c:389:12: warning: unused function 'IsCommentLine' [-Wunused-function]
static int IsCommentLine(char *buffer){
           ^
10 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_generic.c -o read_generic.o
read_generic.c:283:24: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
  uint32_t len = value.len/ sizeof(uint16_t);
                 ˜˜˜˜˜˜^˜˜˜
read_generic.c:296:42: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
    contents[i]=(((contents[i]>>8)&0xff) | ((contents[i]&0xff)<<8));
               ˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:396:10: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
  return contents;
  ˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
read_generic.c:458:1: warning: control may reach end of non-void function [-Wreturn-type]
}
^
read_generic.c:506:27: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
    *(uint32_t *)result = decode_UINT32_t(triplet.value);
                        ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:472:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:479:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = wcslen(temp2);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:549:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp,temp2,triplet.value.len/2 + 1);
    ˜˜˜˜˜˜˜˜            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:591:19: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
    temp_uint32 = decode_UINT32_t(triplet.value);
                ˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:541:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:550:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:561:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:569:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:577:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:585:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:593:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:601:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:609:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
    *size = strlen(temp);
          ˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:650:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
  mbstowcs(wname, name, len);
  ˜˜˜˜˜˜˜˜              ^˜˜
read_generic.c:643:13: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int len = strlen(name);
      ˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:1261:41: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, string.value, string.len);
    ˜˜˜˜˜˜˜˜                     ˜˜˜˜˜˜˜^˜˜
read_generic.c:1304:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp2,temp,triplet.value.len/2 + 1);
    ˜˜˜˜˜˜˜˜            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1313:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp2,temp,size);
    ˜˜˜˜˜˜˜˜            ^˜˜˜
read_generic.c:1287:42: warning: variable 'temp32' is uninitialized when used here [-Wuninitialized]
    Rprintf("Its a float  value is %f\n",temp32);
                                         ^˜˜˜˜˜
read_generic.c:1277:13: note: initialize the variable 'temp32' to silence this warning
  int temp32;
            ^
             = 0
read_generic.c:1630:25: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp2,temp,size);
    ˜˜˜˜˜˜˜˜            ^˜˜˜
read_generic.c:1683:1: warning: control may reach end of non-void function [-Wreturn-type]
}
^
read_generic.c:1712:79: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, my_data_header->Date_time.value, my_data_header->Date_time.len);
    ˜˜˜˜˜˜˜˜                                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1722:73: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, my_data_header->locale.value, my_data_header->locale.len);
    ˜˜˜˜˜˜˜˜                                     ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1739:108: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     wcstombs(temp, my_data_header->name_type_value[i].name.value, my_data_header->name_type_value[i].name.len);
     ˜˜˜˜˜˜˜˜                                                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1789:90: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     wcstombs(temp, my_data_group->data_group_name.value, my_data_group->data_group_name.len);
     ˜˜˜˜˜˜˜˜                                             ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1786:7: warning: variable 'tmp_sexp' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if (my_data_group->data_group_name.len > 0){
      ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:1793:33: note: uninitialized use occurs here
  SET_VECTOR_ELT(return_value,0,tmp_sexp);
                                ^˜˜˜˜˜˜˜
read_generic.c:1786:3: note: remove the 'if' if its condition is always true
  if (my_data_group->data_group_name.len > 0){
  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_generic.c:1782:16: note: initialize the variable 'tmp_sexp' to silence this warning
  SEXP tmp_sexp, return_names;
               ^
                = NULL
read_generic.c:1821:81: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, my_data_set->data_set_name.value, my_data_set->data_set_name.len);
    ˜˜˜˜˜˜˜˜                                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1834:101: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, my_data_set->name_type_value[i].name.value, my_data_set->name_type_value[i].name.len);
    ˜˜˜˜˜˜˜˜                                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1847:110: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
     wcstombs(temp, my_data_set->col_name_type_value[i].name.value, my_data_set->col_name_type_value[i].name.len);
     ˜˜˜˜˜˜˜˜                                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:1944:99: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
       wcstombs(temp, ((AWSTRING *)data_set->Data[j])[i].value,((AWSTRING *)data_set->Data[j])[i].len);
       ˜˜˜˜˜˜˜˜                                                ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:2010:87: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, my_data_group.data_group_name.value, my_data_group.data_group_name.len);
    ˜˜˜˜˜˜˜˜                                            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_generic.c:2021:81: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
      wcstombs(temp, my_data_set.data_set_name.value, my_data_set.data_set_name.len);
      ˜˜˜˜˜˜˜˜                                        ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
37 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o
read_multichannel_celfile_generic.c:92:41: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(temp, string.value, string.len);
    ˜˜˜˜˜˜˜˜                     ˜˜˜˜˜˜˜^˜˜
read_multichannel_celfile_generic.c:105:7: warning: unused variable 'i' [-Wunused-variable]
  int i=0, j=0, k=0;
      ^
read_multichannel_celfile_generic.c:106:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:109:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:105:17: warning: unused variable 'k' [-Wunused-variable]
  int i=0, j=0, k=0;
                ^
read_multichannel_celfile_generic.c:197:94: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(returnvalue, my_data_group.data_group_name.value, my_data_group.data_group_name.len);
    ˜˜˜˜˜˜˜˜                                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_multichannel_celfile_generic.c:161:7: warning: unused variable 'i' [-Wunused-variable]
  int i=0, j=0, k=0;
      ^
read_multichannel_celfile_generic.c:162:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:173:20: warning: unused variable 'my_data_set' [-Wunused-variable]
  generic_data_set my_data_set;
                   ^
read_multichannel_celfile_generic.c:161:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:165:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:261:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_multichannel_celfile_generic.c:261:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_multichannel_celfile_generic.c:221:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:220:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:223:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:320:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_multichannel_celfile_generic.c:320:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_multichannel_celfile_generic.c:280:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:277:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:278:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:391:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_multichannel_celfile_generic.c:391:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_multichannel_celfile_generic.c:344:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:341:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:342:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:472:28: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *noutliers = my_data_set.nrows;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_multichannel_celfile_generic.c:490:25: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *nmasks = my_data_set.nrows;
          ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_multichannel_celfile_generic.c:416:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:418:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:415:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:522:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:516:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_multichannel_celfile_generic.c:661:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:660:17: warning: unused variable 'k' [-Wunused-variable]
  int i=0, j=0, k=0;
                ^
read_multichannel_celfile_generic.c:664:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:660:7: warning: unused variable 'i' [-Wunused-variable]
  int i=0, j=0, k=0;
      ^
read_multichannel_celfile_generic.c:748:94: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    wcstombs(returnvalue, my_data_group.data_group_name.value, my_data_group.data_group_name.len);
    ˜˜˜˜˜˜˜˜                                                   ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_multichannel_celfile_generic.c:725:20: warning: unused variable 'my_data_set' [-Wunused-variable]
  generic_data_set my_data_set;
                   ^
read_multichannel_celfile_generic.c:713:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:713:7: warning: unused variable 'i' [-Wunused-variable]
  int i=0, j=0, k=0;
      ^
read_multichannel_celfile_generic.c:714:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:717:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:803:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_multichannel_celfile_generic.c:803:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_multichannel_celfile_generic.c:764:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:766:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:763:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:861:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_multichannel_celfile_generic.c:861:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((float *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_multichannel_celfile_generic.c:822:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:819:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:820:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:930:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
              ^˜˜˜˜˜˜˜˜
read_multichannel_celfile_generic.c:930:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
    intensity[chip_num*my_data_set.nrows + i] = (double)(((short *)my_data_set.Data[0])[i]);
                                         ˜ ^
read_multichannel_celfile_generic.c:884:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:881:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:882:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:1006:28: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *noutliers = my_data_set.nrows;
             ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_multichannel_celfile_generic.c:1024:25: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
  *nmasks = my_data_set.nrows;
          ˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1049:17: note: expanded from macro 'nrows'
#define nrows                   Rf_nrows
                                ^
read_multichannel_celfile_generic.c:951:7: warning: unused variable 'cur_index' [-Wunused-variable]
  int cur_index;
      ^
read_multichannel_celfile_generic.c:950:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0, k=0;
           ^
read_multichannel_celfile_generic.c:953:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
read_multichannel_celfile_generic.c:1049:12: warning: unused variable 'j' [-Wunused-variable]
  int i=0, j=0;
           ^
read_multichannel_celfile_generic.c:1055:7: warning: unused variable 'fread_err' [-Wunused-variable]
  int fread_err=0;
      ^
65 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include   -g -O2   -fPIC  -mtune=native -ggdb -O0 -Wall -pedantic -Wconversion -c read_pgf.c -o read_pgf.o
read_pgf.c:266:68: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    my_tokenset->tokens = Realloc(my_tokenset->tokens,my_tokenset->n,char*);
                          ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_pgf.c:365:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int tokenlength = strlen(token);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜
read_pgf.c:366:21: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  int ends_length = strlen(ends_in);
      ˜˜˜˜˜˜˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_pgf.c:920:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->chip_type = Realloc(header->chip_type, header->n_chip_type+1, char *);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_pgf.c:970:91: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->other_headers_keys = Realloc(header->other_headers_keys,header->n_other_headers+1, char *);
                                       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_pgf.c:971:95: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->other_headers_values = Realloc(header->other_headers_values,header->n_other_headers+1, char *);
                                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_pgf.c:972:70: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          header->chip_type = Realloc(header->chip_type, header->n_chip_type+1, char *);
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_pgf.c:901:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
read_pgf.c:1167:23: warning: unused variable 'temp_ptr' [-Wunused-variable]
  probeset_list_node *temp_ptr;
                      ^
read_pgf.c:1265:28: warning: incompatible pointer types assigning to 'probeset_list_node *' from 'struct probeset_list_node *' [-Wincompatible-pointer-types]
        my_pgf->probesets->current= my_pgf->probesets->current->next;
                                  ^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_pgf.c:1279:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
          my_type_list = Realloc(my_type_list,(n+1),probeset_type_list);
                         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:63:68: note: expanded from macro 'Realloc'
#define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) )
                                                                   ^
read_pgf.c:363:12: warning: unused function 'token_ends_with' [-Wunused-function]
static int token_ends_with(char *token, char *ends_in){
           ^
12 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o affyio.so fread_functions.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -lpthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/affyio.Rcheck/affyio/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (affyio)