TransView 1.4.2
Julius Muller
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/TransView | | Last Changed Rev: 75930 / Revision: 76155 | | Last Changed Date: 2013-04-23 00:54:55 -0700 (Tue, 23 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TransView.buildbin-libdir TransView_1.4.2.tar.gz'
>>>>>>>
* installing *source* package 'TransView' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c R_init_TransView.c -o R_init_TransView.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c bin_density.c -o bin_density.o
bin_density.c:32:6: warning: unused variable 'msum' [-Wunused-variable]
int msum=0,result=orivec[*cpos];
^
bin_density.c:64:75: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
return((orivec[*cpos-(wwidth/2)-1] + orivec[*cpos-((wwidth-1)/2)-1]) / 2.0);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
bin_density.c:102:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int msum,mpos,cpos=0,wwidth=ceil((double)orivecl/(double)window_count),nvc=0;
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bin_density.c:102:11: warning: unused variable 'mpos' [-Wunused-variable]
int msum,mpos,cpos=0,wwidth=ceil((double)orivecl/(double)window_count),nvc=0;
^
bin_density.c:102:6: warning: unused variable 'msum' [-Wunused-variable]
int msum,mpos,cpos=0,wwidth=ceil((double)orivecl/(double)window_count),nvc=0;
^
bin_density.c:124:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int wwidth=floor((double)window_count/(double)orivecl),cpos=0,wc=0,nvc=0;
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bin_density.c:153:9: warning: unused variable 'msum' [-Wunused-variable]
double msum=0,result=orivec[*cpos];
^
bin_density.c:224:30: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int msum,mpos,cpos=0,wwidth=ceil((double)orivecl/(double)window_count),nvc=0;
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bin_density.c:224:11: warning: unused variable 'mpos' [-Wunused-variable]
int msum,mpos,cpos=0,wwidth=ceil((double)orivecl/(double)window_count),nvc=0;
^
bin_density.c:224:6: warning: unused variable 'msum' [-Wunused-variable]
int msum,mpos,cpos=0,wwidth=ceil((double)orivecl/(double)window_count),nvc=0;
^
bin_density.c:246:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int wwidth=floor((double)window_count/(double)orivecl),cpos=0,wc=0,nvc=0;
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
11 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c construct_dc.c -o construct_dc.o
In file included from construct_dc.c:23:
In file included from ./parse_sam.h:4:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include/samtools/sam.h:4:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include/samtools/bam.h:746:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
data = (uint8_t*)realloc(data, m_data);
˜˜˜˜˜˜˜ ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include/samtools/bam.h:767:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
b->data = (uint8_t*)calloc(b->data_len, 1);
˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜
construct_dc.c:40:9: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
return(fcvg);
˜˜˜˜˜˜ ^˜˜˜
construct_dc.c:71:11: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
ft->seqn=flen;
˜^˜˜˜
construct_dc.c:176:21: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
chrom_tid=bresults.chrom_index_next;
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:177:103: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
if(user_args->VERBOSE>0)printStatus(bam_file->header->target_name[chrom_tid], &cc, bam_file->header->n_targets);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
construct_dc.c:180:104: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
if(user_args->VERBOSE>0)printStatus(bam_file->header->target_name[chrom_tid], &cc, bam_file->header->n_targets);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
construct_dc.c:185:53: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
cs.max_pos=bam_file->header->target_len[chrom_tid]+1;//+1 for 0 based sources
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
construct_dc.c:188:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long long' [-Wsign-conversion]
gd->gsize+=cs.min_scorespace;//calculate total amount of genomic region covered [spanning first read to last read]
˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:208:24: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
chrom_tid=bresults.chrom_index_next;
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:215:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
cs.min_scorespace=filter_coverage(filter_index,ft);//override scorespace by bps covered by the filter
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:236:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
cs.min_scorespace=(++cs.min_scorespace)/(4/sizeof(usersize));//Only half the space needed with uint16_t
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
construct_dc.c:257:12: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
bstart=ft->values[filter_index][fcount++];//C index 0 based
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:258:10: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
bend=ft->values[filter_index][fcount++];//C index 0 based
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:261:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
if(fcount>3)bend=ft->values[filter_index][fcount-3];//just in case the end of the chromosome is reached -> use last end as index end
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:269:31: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
gen_indp[scount_ind]=bstart+1;//C index 0 based -> genomic position +1
˜˜˜˜˜˜˜^˜
construct_dc.c:270:23: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
l_indp[scount_ind]=scount;//R index 1 based -> but accession will be in C
˜^˜˜˜˜˜
construct_dc.c:282:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if(histc%user_args->HWINDOW==0){
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
construct_dc.c:283:43: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
++gd->histogramp[windowt/user_args->HWINDOW];
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
construct_dc.c:292:64: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if(user_args->HWINDOW>1)++gd->histogramp[windowt/user_args->HWINDOW];//empty last window | prerequisite: HWINDOW<=COMPRESSION!
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
construct_dc.c:298:48: warning: operand of ? changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
gen_indp[scount_ind]=user_args->FILTER ? bend+1 : cs.max_pos+1;//override read based cs.maxpos to filter end in case of FILTER. +1 to indicate start of next block
˜ ˜˜˜˜^˜
construct_dc.c:299:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
l_indp[scount_ind]=scount;
˜^˜˜˜˜˜
construct_dc.c:329:22: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
chrom_tid=bresults.chrom_index_next;
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:402:13: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
UNPROTECT(upcounter);
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:548:35: note: expanded from macro 'UNPROTECT'
#define UNPROTECT(n) Rf_unprotect(n)
^
construct_dc.c:415:38: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
gd.total_elements=bam_file->header->n_targets;//one vector per chromosome needed
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
construct_dc.c:419:17: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
upcounter+=set_filter(filterList,&ft);
˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
construct_dc.c:467:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
UNPROTECT(upcounter+gd.upcounter);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:548:35: note: expanded from macro 'UNPROTECT'
#define UNPROTECT(n) Rf_unprotect(n)
^
27 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c parse_sam.c -o parse_sam.o
In file included from parse_sam.c:13:
In file included from ./parse_sam.h:4:
In file included from /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include/samtools/sam.h:4:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include/samtools/bam.h:746:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
data = (uint8_t*)realloc(data, m_data);
˜˜˜˜˜˜˜ ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include/samtools/bam.h:767:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
b->data = (uint8_t*)calloc(b->data_len, 1);
˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜
parse_sam.c:75:23: warning: implicit conversion changes signedness: 'uint8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
bufread->revcomp=rm->revcomp;
˜˜˜˜˜^˜˜˜˜˜˜
parse_sam.c:115:19: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
rm->genomic_end= bam_calend(&temp_read->core,bam1_cigar(temp_read));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
parse_sam.c:150:13: warning: implicit conversion changes signedness: 'int' to 'uint8_t' (aka 'unsigned char') [-Wsign-conversion]
rm->skip=-4;
˜^˜
parse_sam.c:162:13: warning: implicit conversion changes signedness: 'int' to 'uint8_t' (aka 'unsigned char') [-Wsign-conversion]
rm->skip=-4;
˜^˜
parse_sam.c:192:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long long' [-Wsign-conversion]
bresults->mapmass+=rm->read_length;
˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
parse_sam.c:235:54: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
uint32_t nindex=0,*ind_start,*ind_end,max_index=cs->min_indexspace;
˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
parse_sam.c:243:34: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
uint32_t BUFFERLIMIT=cs->max_pos+1;//there are no more than this many items calloc'ed
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜^˜
parse_sam.c:244:26: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
uint32_t INDEXLIMIT=cs->min_indexspace;
˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
parse_sam.c:262:24: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
*(databl_end++)=cs->max_pos;//completes the missing end entry to be on par with start
˜˜˜˜˜^˜˜˜˜˜˜
parse_sam.c:265:23: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
cs->min_indexspace=nindex;
˜^˜˜˜˜˜
parse_sam.c:294:23: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
*databl_end++=cs->max_pos;//completes the missing end entry to be on par with start
˜˜˜˜˜^˜˜˜˜˜˜
parse_sam.c:296:24: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
cs->min_indexspace=nindex;
˜^˜˜˜˜˜
parse_sam.c:354:48: warning: implicit conversion loses integer precision: 'uint32_t' (aka 'unsigned int') to 'uint16_t' (aka 'unsigned short') [-Wconversion]
}else{write_density_gapped(cptr,fr.cigar,fr.n_cigar,&bresults.maxScore);}
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜
parse_sam.c:370:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
*databl_start++=fr.pos;++nindex;//genomic coordinate where the data block starts
˜˜˜˜^˜˜
parse_sam.c:373:23: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
cs->min_indexspace=nindex;
˜^˜˜˜˜˜
parse_sam.c:390:18: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
*databl_end++=last_end;//genomic coordinate where the data block ends | lags one index position behind start in the main loop!
˜^˜˜˜˜˜˜˜
parse_sam.c:392:39: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
*databl_start++=current_read->core.pos;//genomic coordinate where the data block starts beginning with the current read
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
19 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c slice_dc.c -o slice_dc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/include" -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c visuals.c -o visuals.o
visuals.c:36:18: warning: implicit conversion turns floating-point number into integer: 'float' to 'int' [-Wconversion]
int c= ratio * w;
˜ ˜˜˜˜˜˜^˜˜
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o TransView.so R_init_TransView.o bin_density.o construct_dc.o parse_sam.o slice_dc.o visuals.o /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/usrlib//libbam.a -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/TransView.buildbin-libdir/TransView/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TransView)
>>>>>>>
>>>>>>> FIXING LINKS FOR TransView.buildbin-libdir/TransView/libs//TransView.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "TransView.buildbin-libdir/TransView/libs//TransView.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "TransView.buildbin-libdir/TransView/libs//TransView.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "TransView.buildbin-libdir/TransView/libs//TransView.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "TransView.buildbin-libdir/TransView/libs//TransView.so"